Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_C07
         (338 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28971-1|AAA68376.2|  551|Caenorhabditis elegans Egg sterile (un...    27   4.5  
U23521-8|AAC46810.4|  505|Caenorhabditis elegans Hypothetical pr...    26   6.0  

>U28971-1|AAA68376.2|  551|Caenorhabditis elegans Egg sterile
           (unfertilizable) protein1 protein.
          Length = 551

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 94  CVNMSADAEGVNSACGASD-AGCEGCQ 171
           C+ +SA  +G+N    ASD   C  CQ
Sbjct: 229 CLPLSAKCDGINDCADASDEKNCSKCQ 255


>U23521-8|AAC46810.4|  505|Caenorhabditis elegans Hypothetical
           protein F41C3.3 protein.
          Length = 505

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 212 SSVGCFRSCSVLDH*HPSHPASLAPHAELTPSASADIFTH 93
           S  G   +C++++H   S PAS+   +  T      I TH
Sbjct: 148 SEAGSLNACTMIEHVEKSDPASVCYTSGTTGLPKGAILTH 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,832,312
Number of Sequences: 27780
Number of extensions: 132416
Number of successful extensions: 469
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)