Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_C07
         (338 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.33 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   0.76 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   5.4  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           20   7.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   9.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   9.4  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              20   9.4  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          20   9.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   9.4  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.6 bits (51), Expect = 0.33
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 36  VSIPPTPNLISYITS 80
           ++ PPTPNL+ Y  S
Sbjct: 824 ITTPPTPNLLRYFAS 838


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 0.76
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 6    RGRRECTAQRVSIPPTPNLIS 68
            RGR +  + R++ PPTP  IS
Sbjct: 1384 RGRNDDGSDRLTSPPTPLSIS 1404


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -1

Query: 173 H*HPSHPASLAPHAELTP 120
           H H  HP+   PH   +P
Sbjct: 317 HPHQHHPSQYHPHRGSSP 334


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 14  KRVYRPKSVYTTHTEFDLIYHKP*IYCV*ICLRTLKG 124
           + V R    YT HT+   +     +Y + I  RTL G
Sbjct: 64  ENVIRDAVTYTEHTKRKTVTAMDVVYALKIQGRTLYG 100


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 10  DEESVPPKECLYHP 51
           DEE+ P  + L HP
Sbjct: 376 DEEAAPAPQHLIHP 389


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 10  DEESVPPKECLYHP 51
           DEE+ P  + L HP
Sbjct: 376 DEEAAPAPQHLIHP 389


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = -3

Query: 159 TSCVTCSTRGVNPFSVRRHI 100
           T CV C   G      R+H+
Sbjct: 38  TECVFCRNNGEEEAYYRKHL 57


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 106 TYSHTIYLGLVIYEIKFGV 50
           T +H I  G+   +I FGV
Sbjct: 32  TITHNILRGMQFTDITFGV 50


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 10  DEESVPPKECLYHP 51
           DEE+ P  + L HP
Sbjct: 314 DEEAAPAPQHLIHP 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,986
Number of Sequences: 438
Number of extensions: 1641
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)