Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_C05
(425 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce... 123 1e-29
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 27 1.6
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 27 1.6
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc... 27 1.6
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 26 2.1
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 26 2.8
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 25 4.9
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch... 25 4.9
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 25 4.9
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 25 6.5
>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 83
Score = 123 bits (296), Expect = 1e-29
Identities = 53/75 (70%), Positives = 63/75 (84%)
Frame = +3
Query: 63 MPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 242
M LA+DLL+PS SE RKHKLK+LV P S+FMDVKCPGC+ ITTVFSHAQ VV+C C+
Sbjct: 1 MVLAVDLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCA 60
Query: 243 TILCQPTGGRARLTE 287
++LCQPTGG+ARL E
Sbjct: 61 SVLCQPTGGKARLME 75
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 1.6
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -2
Query: 148 FGCGTNLFNLCFLLSDAGEGCNKSIASGMVTAFLVPNTCSPG 23
F CGT + C++ D E +++ ++ N+ SPG
Sbjct: 830 FKCGTCVHERCYVCDDYAENEQMLVSASHLSGRTTRNSASPG 871
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 26.6 bits (56), Expect = 1.6
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -1
Query: 146 WMWYQSLQLMFPPLRRGGRVQ 84
W+W+ +L L+FP + +V+
Sbjct: 459 WLWFMALMLLFPSYQNPNKVE 479
>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 26.6 bits (56), Expect = 1.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 149 VWMWYQSLQLMFPPLRR 99
VWMW+ L L+FP ++
Sbjct: 459 VWMWFMILMLLFPQYQK 475
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 26.2 bits (55), Expect = 2.1
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +3
Query: 255 QPTGGRARLTEVIVLGK*KDVHLEENSIKSWRESRINFKIMFVSNNMN 398
+PT + + E IVLG KDV EE I++ +++ I+ I+ + N N
Sbjct: 1203 EPTLYQGTVRENIVLGASKDVS-EEEMIEACKKANIHEFILGLPNGYN 1249
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 25.8 bits (54), Expect = 2.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 263 WWPS*INGSYSSWKMKGCSFRRKQH*VLEREPY 361
W P+ +G YS +K+ RR+ LER+ Y
Sbjct: 649 WTPALEDGEYSDFKLDSERIRRELKTFLERDNY 681
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 25.0 bits (52), Expect = 4.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 221 NPLCVAKYRSYFVATGTF 168
+P + KY+ YFV T TF
Sbjct: 23 HPCSILKYKVYFVTTDTF 40
>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 25.0 bits (52), Expect = 4.9
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 421 KEFVKRHSFILLETNIILKLIRLSLQDLMLFSSK*TSFHFPRTITSVNLA 272
++ + R + LE ++L + L DL+L SS S FP I +N A
Sbjct: 415 RQVISRMPPVSLEMQVLLHK-QTQLIDLLLESSLRNSLSFPMLIAGLNAA 463
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 25.0 bits (52), Expect = 4.9
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 336 IKSWRESRINFKIMFVS 386
+K WRES++ F + F+S
Sbjct: 478 VKHWRESKVPFLVYFLS 494
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 24.6 bits (51), Expect = 6.5
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 230 AYNNPLCV-AKYRSYFVATGTFDIHEIRVWMWYQSL 126
++ NP + AK+RS+ T D ++R W+ + S+
Sbjct: 2 SFQNPSYINAKHRSFLQPKDTQDSQDLRNWVSHSSV 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,899,425
Number of Sequences: 5004
Number of extensions: 38533
Number of successful extensions: 70
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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