Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_C05
(425 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719... 117 5e-27
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460... 59 2e-09
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590 57 7e-09
04_04_0303 + 24269467-24270741 33 0.096
02_01_0418 - 3059575-3061279,3061915-3061973,3064270-3064353,306... 27 4.8
03_02_0238 - 6687334-6687421,6687456-6687512,6688266-6688351,668... 27 6.3
03_01_0340 - 2680860-2682197 27 6.3
01_05_0578 - 23389066-23389302,23389428-23389571,23389721-23390722 27 6.3
08_01_0392 - 3454224-3454325,3454926-3455035,3455496-3455609,345... 27 8.3
06_03_0784 - 24557089-24557198,24557296-24560725 27 8.3
04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987,888... 27 8.3
>04_03_0487 +
16471538-16471540,16471694-16471795,16471880-16471908,
16472619-16472745
Length = 86
Score = 117 bits (281), Expect = 5e-27
Identities = 51/71 (71%), Positives = 58/71 (81%)
Frame = +3
Query: 75 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 254
IDLL+P E+ KHK KRLV PNS+FMDVKC GC+ ITTVFSH+Q VVVC GC T+LC
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLC 66
Query: 255 QPTGGRARLTE 287
QPTGG+ARLTE
Sbjct: 67 QPTGGKARLTE 77
>02_03_0220 +
16545571-16545573,16545717-16545818,16545980-16546008,
16549421-16553036
Length = 1249
Score = 58.8 bits (136), Expect = 2e-09
Identities = 26/46 (56%), Positives = 32/46 (69%)
Frame = +3
Query: 75 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHA 212
IDLL+P E+ KHK KRLV PNS+FMDVKC GC+ ++ F A
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNMSVRFDIA 52
>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
Length = 45
Score = 56.8 bits (131), Expect = 7e-09
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = +3
Query: 75 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKI 191
IDLL+P E+ KHK KRLV PNS+FMDVKC GC+ +
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFSM 45
>04_04_0303 + 24269467-24270741
Length = 424
Score = 33.1 bits (72), Expect = 0.096
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = +3
Query: 72 AIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 251
A+ LLHP L ++PH S +D CP Y+I ++ RVV C+++
Sbjct: 148 AVRLLHPFTGDTAELPPLGTVLPHLGSRLLD--CPAPYRIRSL----ARVV----CASVS 197
Query: 252 CQPTG-GRARLTEVIVLGK*KDVHLEENSIKSW 347
C TG G +T ++ L V + + W
Sbjct: 198 CSATGAGAGAITVLLALSVVSRVAFATSLDRQW 230
>02_01_0418 -
3059575-3061279,3061915-3061973,3064270-3064353,
3064395-3064559
Length = 670
Score = 27.5 bits (58), Expect = 4.8
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 54 AVTMPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSH 209
AV L L+ + ASERRK K+ L N + + YK V SH
Sbjct: 51 AVPRSLEAKLMVKTLASERRKRKVNNLERKGNKVDVSIAANDYYKPRAVKSH 102
>03_02_0238 -
6687334-6687421,6687456-6687512,6688266-6688351,
6688410-6688589
Length = 136
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 180 CYKITTVFSHAQRVVVCAGCSTILCQPTGGR 272
CYKI+ ++SH Q ++ C IL +PTG R
Sbjct: 96 CYKISKIYSHGQSLL----CLDIL-RPTGRR 121
>03_01_0340 - 2680860-2682197
Length = 445
Score = 27.1 bits (57), Expect = 6.3
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 111 SSPTRGKGAINQLRAAWLQLSSCRIPAARGIH 16
SS G ++ R WL+ C+I +R +H
Sbjct: 370 SSQAVANGDVHNFRTDWLRNKECKIGRSRSVH 401
>01_05_0578 - 23389066-23389302,23389428-23389571,23389721-23390722
Length = 460
Score = 27.1 bits (57), Expect = 6.3
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = -3
Query: 123 TYVSSSPTRGKGAINQLRAAWLQLSSCRIPAARG 22
T SSS RG I+QL A LQ R+PAA G
Sbjct: 38 TTSSSSHARGGDRISQLPAELLQDVVSRLPAADG 71
>08_01_0392 -
3454224-3454325,3454926-3455035,3455496-3455609,
3455930-3456043,3456474-3456531
Length = 165
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +3
Query: 144 PNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGG 269
PN + C GC + ++ V CA CST+ P G
Sbjct: 18 PNGAQSQLVCSGCRNLL-MYPAGATSVCCAVCSTVTAVPAPG 58
>06_03_0784 - 24557089-24557198,24557296-24560725
Length = 1179
Score = 26.6 bits (56), Expect = 8.3
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +3
Query: 21 SPGLQVFGTRKAVTMPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVK 170
SP L + +T+P + HP S H L+ L HP+S FMD +
Sbjct: 608 SPDLNHMIHLRCLTLP---NTNHPLSDSLCSLHHLRMLSVHPHSCFMDTR 654
>04_02_0031 +
8874025-8874180,8882152-8882550,8882651-8882987,
8883234-8884060
Length = 572
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 57 VTMPLAIDLLHPSPASERRKHK 122
+T P DL + +PA++RR+HK
Sbjct: 98 LTQPFPADLPNNAPAAQRREHK 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,149,192
Number of Sequences: 37544
Number of extensions: 283845
Number of successful extensions: 735
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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