Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_C02
         (273 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    29   0.089
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    25   1.9  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    23   5.9  

>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 29.5 bits (63), Expect = 0.089
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = -1

Query: 258 SALNLFLTRFNHKFYPEP*LFLVLR*SKNISHKF----KHLPVKLALNWILFI 112
           S++ LF +  N +FYP P L   L+    +   F    K L   LALNW LF+
Sbjct: 65  SSVGLFESHENIRFYPIPSLPAYLQPKNRLQFLFLGPLKVLHQFLALNWALFV 117


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 171 YFYFILVLKTIRVPGK 218
           Y+Y+ LV K IRVP K
Sbjct: 182 YYYYYLVAKGIRVPWK 197


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 171 ISHKFKHLPV 142
           I HKF+HLPV
Sbjct: 156 IEHKFRHLPV 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,035,787
Number of Sequences: 5004
Number of extensions: 17780
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)