Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_C02
         (273 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1269 + 35352825-35352888,35353645-35353968,35355062-353551...    26   3.6  
01_06_0827 + 32260313-32260525,32261862-32262716                       25   8.3  

>02_05_1269 +
           35352825-35352888,35353645-35353968,35355062-35355183,
           35355361-35355482,35355651-35355755,35356402-35356765,
           35357181-35357321,35357619-35359109
          Length = 910

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 80  SKIIRAPREKKMNKIQFNAS 139
           S+ +RAPR KK  K+Q  AS
Sbjct: 210 SRKMRAPRSKKARKVQLKAS 229


>01_06_0827 + 32260313-32260525,32261862-32262716
          Length = 355

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 66  LKLRGVTK*SPVKIRPPVP 10
           L+LR VT   P+K RPP P
Sbjct: 123 LRLRVVTNQGPIKPRPPRP 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,364,936
Number of Sequences: 37544
Number of extensions: 99763
Number of successful extensions: 112
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)