Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_C02
         (273 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical ...    28   1.0  
U55367-2|AAA97988.2|  356|Caenorhabditis elegans G protein, alph...    26   3.2  
AY008132-1|AAG32085.1|  356|Caenorhabditis elegans heterotrimeri...    26   3.2  
L23649-1|AAA27912.1|  568|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z81109-17|CAB03241.2|  497|Caenorhabditis elegans Hypothetical p...    25   7.3  
U41625-5|AAA83327.1|  700|Caenorhabditis elegans Suppressor of a...    25   7.3  
AY091467-1|AAM44123.1|  700|Caenorhabditis elegans SUR-5 protein.      25   7.3  

>AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical
           protein F02E11.2 protein.
          Length = 514

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 264 APSALNLFLTRFNHKFYPE 208
           AP A   FLT+ NH+F+PE
Sbjct: 282 APGAHFFFLTQKNHRFFPE 300


>U55367-2|AAA97988.2|  356|Caenorhabditis elegans G protein, alpha
           subunit protein 10 protein.
          Length = 356

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 255 ALNLFLTRFNHKFYPEP*LFLVLR*SKNISHKFKHLPVK 139
           ++ LF T FN KF+ +  + L L        K KH+ +K
Sbjct: 249 SIRLFWTVFNGKFFKKAAVILFLNKIDLFEEKVKHVKIK 287


>AY008132-1|AAG32085.1|  356|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 356

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 255 ALNLFLTRFNHKFYPEP*LFLVLR*SKNISHKFKHLPVK 139
           ++ LF T FN KF+ +  + L L        K KH+ +K
Sbjct: 249 SIRLFWTVFNGKFFKKAAVILFLNKIDLFEEKVKHVKIK 287


>L23649-1|AAA27912.1|  568|Caenorhabditis elegans Hypothetical
          protein C02C2.4 protein.
          Length = 568

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 74 NSTLSYAE*LNKVPSKSVHPFRPR 3
          NST+ Y   L  +PS   HPF  R
Sbjct: 24 NSTIKYPNELTTLPSSLFHPFSRR 47


>Z81109-17|CAB03241.2|  497|Caenorhabditis elegans Hypothetical
           protein R10D12.10 protein.
          Length = 497

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 35  GLYLVTPRNLRYY*LSKIIRAPREKKMNK 121
           GL  V P N+ +Y   K+++  +EK+  K
Sbjct: 341 GLQYVLPANVPFYAEEKVVKKNKEKEREK 369


>U41625-5|AAA83327.1|  700|Caenorhabditis elegans Suppressor of
           activated let-60ras protein 5 protein.
          Length = 700

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = -1

Query: 129 NWILFIFFSRGALIIFD 79
           NW++   +S+G++++FD
Sbjct: 368 NWMISFLYSKGSVVLFD 384


>AY091467-1|AAM44123.1|  700|Caenorhabditis elegans SUR-5 protein.
          Length = 700

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = -1

Query: 129 NWILFIFFSRGALIIFD 79
           NW++   +S+G++++FD
Sbjct: 368 NWMISFLYSKGSVVLFD 384


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,633,149
Number of Sequences: 27780
Number of extensions: 94857
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 227290938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)