Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_C01
         (345 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   113   4e-26
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   110   2e-25
04_04_0157 + 23165638-23166633                                         28   1.7  
02_02_0625 - 12339623-12339707,12339938-12340062,12340844-123409...    26   6.9  
05_04_0083 + 17780665-17780764,17781070-17781124,17781193-177813...    26   9.1  
05_03_0331 + 12488005-12488454,12488561-12489505                       26   9.1  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  113 bits (272), Expect = 4e-26
 Identities = 55/104 (52%), Positives = 67/104 (64%)
 Frame = +1

Query: 34  ATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKX 213
           A   G    L+ +E+DV  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEK 
Sbjct: 3   AVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKL 62

Query: 214 XXXXXXXXXXEDPADVFVISSRAFGQRAVLKFAAQTGATPIAGR 345
                     E+P D+ V S+R +GQRAVLKFA  TGA  IAGR
Sbjct: 63  QLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGR 106


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  110 bits (265), Expect = 2e-25
 Identities = 56/102 (54%), Positives = 67/102 (65%), Gaps = 2/102 (1%)
 Frame = +1

Query: 46  GGLDLLALS--EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXX 219
           GG    ALS  E+D+  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEK   
Sbjct: 5   GGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQL 64

Query: 220 XXXXXXXXEDPADVFVISSRAFGQRAVLKFAAQTGATPIAGR 345
                   E+P D+ V S+R +GQRAVLKFA  TGA  IAGR
Sbjct: 65  AARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGR 106


>04_04_0157 + 23165638-23166633
          Length = 331

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 209 FSHVRRRLITCVPSPRRL 156
           FSH+RRRL+  +P+P  L
Sbjct: 5   FSHLRRRLLAAIPNPNLL 22


>02_02_0625 -
           12339623-12339707,12339938-12340062,12340844-12340996,
           12342037-12342102,12343374-12343443,12343523-12343593,
           12343664-12343795,12344042-12344130,12344189-12344270,
           12344743-12344811,12345641-12345730,12345856-12345918,
           12346158-12346217
          Length = 384

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 141 HLEINIFRSQMGGRRKHLSHIFLAER 64
           HL  ++   ++GG  +HL H+F + R
Sbjct: 47  HLRSDVGCGEIGGNNRHLDHLFDSSR 72


>05_04_0083 +
           17780665-17780764,17781070-17781124,17781193-17781313,
           17781361-17781429,17782047-17782274,17782477-17782666,
           17783303-17783694,17784380-17784427,17784816-17785400
          Length = 595

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 338 AIGVAPVWAANLSTARWPNAR 276
           A+  A  W  N    +WPNAR
Sbjct: 567 AVAEAKTWGENSRERKWPNAR 587


>05_03_0331 + 12488005-12488454,12488561-12489505
          Length = 464

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 329 VAPVWAANLSTARWP 285
           V PVW   + TARWP
Sbjct: 195 VRPVWEREVLTARWP 209



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 107 PIWERKMLISRWRRT 151
           P+WER++L +RW  T
Sbjct: 197 PVWEREVLTARWPPT 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,323,981
Number of Sequences: 37544
Number of extensions: 176942
Number of successful extensions: 356
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)