Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_B24
(344 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 101 4e-23
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 57 9e-10
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 57 9e-10
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 47 7e-07
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 47 9e-07
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 46 2e-06
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 46 2e-06
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 45 4e-06
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 45 4e-06
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 44 7e-06
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 40 8e-05
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 40 1e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 36 0.001
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 36 0.001
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.002
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 34 0.007
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.009
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 31 0.038
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 30 0.088
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 30 0.12
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 30 0.12
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 29 0.20
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.20
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 28 0.47
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 27 0.62
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 27 1.1
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 26 1.4
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 26 1.9
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 25 4.4
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 7.6
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 24 7.6
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 24 7.6
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 101 bits (241), Expect = 4e-23
Identities = 48/70 (68%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 194
L+ EF+ FGTITSAK+M E G+SKGFGFVC+++PEEA KAVTEMN R++ KPLYVALA
Sbjct: 380 LKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 439
Query: 195 QRKEDRKAHL 224
QRKE R++ L
Sbjct: 440 QRKEVRRSQL 449
Score = 52.0 bits (119), Expect = 3e-08
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +3
Query: 12 RGLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 188
+ L F+ FG I S KV +++ G +KG+GFV F S E A A+ +NG ++ K +YV
Sbjct: 182 KALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVG 241
Query: 189 LAQRKEDRKA 218
+ +R++
Sbjct: 242 HHVSRRERQS 251
Score = 50.8 bits (116), Expect = 6e-08
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +3
Query: 30 FAPFGTITSAKVMLEDG-RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 206
F FG ITS ++ + + +GFGFV +++ E A KAV E+N + K LYV AQ+K
Sbjct: 281 FGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKH 340
Query: 207 DRKAHL 224
+R+ L
Sbjct: 341 EREEEL 346
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 56.8 bits (131), Expect = 9e-10
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Frame = +3
Query: 30 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 203
F+PFG+I S+ + G SKG+GFV F E A +A +NG +VG K ++V A+RK
Sbjct: 404 FSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFAERK 463
Query: 204 EDR 212
DR
Sbjct: 464 SDR 466
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 56.8 bits (131), Expect = 9e-10
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
L + F+ FG I S + SKG+GFV FS P EA +A+ +NG + G K L+V
Sbjct: 437 LEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNY 496
Query: 192 AQRKEDRKAHLT 227
A+++EDRK L+
Sbjct: 497 AEKREDRKKRLS 508
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 47.2 bits (107), Expect = 7e-07
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = +3
Query: 48 ITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 215
I K+ E R +GFGFV F++ E+ ++A+ EMNG+ VG L V A +ED++
Sbjct: 245 IRRIKLRGEQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQ 300
Score = 28.7 bits (61), Expect = 0.27
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 90 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 212
G FV F++ E+ KA+ +NG+ + + + V A+ +++
Sbjct: 90 GIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKARPVQEQ 130
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 46.8 bits (106), Expect = 9e-07
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
L++ F+ FGT+T ++M E S+GFGF+ FS+ EEAT A+ +N + + L V
Sbjct: 117 LQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQK 176
Query: 192 AQR 200
A+R
Sbjct: 177 AKR 179
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 46.0 bits (104), Expect = 2e-06
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +3
Query: 12 RGLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 185
R L F+ G + A + D GRSKG+GFV + S E A A+ MN + + KP+ V
Sbjct: 113 RVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITV 172
Query: 186 ALAQRKEDR 212
+ A ++E +
Sbjct: 173 SYAFKREGK 181
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 45.6 bits (103), Expect = 2e-06
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 7/56 (12%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 164
L +EF +GTI A+V+++ GRSKG+G+V F +PE A AV E++GR+V
Sbjct: 279 LGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMV 334
Score = 37.5 bits (83), Expect = 6e-04
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKP 176
L F G I S ++ + GR KGFG+V FS + A K V EMNG + +P
Sbjct: 382 LSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EMNGHFIAGRP 435
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 44.8 bits (101), Expect = 4e-06
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +3
Query: 6 SARGLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 182
S R L F G++ A++ E GRSKGFG V F + +A ++ ++NG G +PL
Sbjct: 292 SDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQ 351
Query: 183 VALA 194
++ A
Sbjct: 352 LSYA 355
Score = 31.1 bits (67), Expect = 0.050
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 194
L+ F G++ A + + ++GRS+G G V SS +EA A+ ++ + L V L
Sbjct: 199 LKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRL- 257
Query: 195 QRKEDRKAH 221
DR AH
Sbjct: 258 ----DRFAH 262
Score = 26.6 bits (56), Expect = 1.1
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +3
Query: 24 KEF-APFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAV-TEMNGRIVG 167
KEF G + + +++ L +G SKG + +S+ EEA A+ T N + +G
Sbjct: 83 KEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQKFMG 133
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 44.8 bits (101), Expect = 4e-06
Identities = 19/60 (31%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 194
L + F+ + ++ KV+ + +G+++GFGFV F ++ KA E NG+ +G++P+ ++ A
Sbjct: 46 LYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRA 105
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 44.0 bits (99), Expect = 7e-06
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +3
Query: 39 FGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 212
+ + SAK+M + S+G+GFV F+ + A+ EM G+I G +P+ V LA K
Sbjct: 210 YNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKS-- 267
Query: 213 KAHL 224
KAH+
Sbjct: 268 KAHV 271
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 40.3 bits (90), Expect = 8e-05
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +3
Query: 30 FAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 203
F PFG I + +D RSKGFG++ + +P A A+ +MNG + + + V L K
Sbjct: 360 FEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDK 418
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 39.9 bits (89), Expect = 1e-04
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +3
Query: 6 SARGLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 185
S + L+ F PFG I + K+ KG GFV +S A KA+ M G +VGT + +
Sbjct: 309 SEKDLQVCFQPFGRILNIKIPF----GKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRL 364
Query: 186 A 188
A
Sbjct: 365 A 365
Score = 38.3 bits (85), Expect = 3e-04
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Frame = +3
Query: 39 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 203
+ + TSAK++++ G S+ +GFV FSS +E A+ M G + +PL +++A K
Sbjct: 206 YPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPK 262
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 36.3 bits (80), Expect = 0.001
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 173
LR F FG + VM + GRS+GFGF+ F +P+ + +++ ++G+I+ K
Sbjct: 179 LRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPK 235
Score = 32.7 bits (71), Expect = 0.016
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +3
Query: 21 RKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 194
R F FG + A +M++ GR +GFGFV + + E A +A + KP+ V A
Sbjct: 264 RNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVEATMSQPYITIHGKPVEVKRA 322
Query: 195 QRKED-RKAH 221
K R +H
Sbjct: 323 TPKASLRDSH 332
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 36.3 bits (80), Expect = 0.001
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +3
Query: 75 DGRSKGFGFVCFSSPEEATKAVTEMNGRIV-GTKPLYVAL 191
+GRSKG + FS P +AT+A + GR+V GT+ + V +
Sbjct: 92 NGRSKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEI 131
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 35.9 bits (79), Expect = 0.002
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +3
Query: 42 GTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 179
G + AKV E GRSKGFGF+ F S + A A+ +NGR + K +
Sbjct: 521 GVLKQAKVETEKAGAGRSKGFGFMQFISHKYALMALRWLNGREITVKKI 569
Score = 34.7 bits (76), Expect = 0.004
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDG-RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 194
L F+ FG + K+ + G R GF FV + A +A+ +NG + +P+ V A
Sbjct: 124 LEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWA 183
Query: 195 QRKE 206
K+
Sbjct: 184 VSKD 187
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 33.9 bits (74), Expect = 0.007
Identities = 16/59 (27%), Positives = 34/59 (57%)
Frame = +3
Query: 30 FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 206
F +G + S ++ + KGFG+V ++ ++A A++ G+ +G + L V L++ +E
Sbjct: 777 FRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAA-GKQLGNRVLNVVLSKPRE 834
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 33.5 bits (73), Expect = 0.009
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 30 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 185
F G + S ++++ E G+ KG+GF + P A AV +N GT+ L V
Sbjct: 25 FKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNLNNYDAGTRRLRV 78
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 31.5 bits (68), Expect = 0.038
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 9 ARGLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGR 158
AR L EF PFG + + + R S+ F FV + +A A E++GR
Sbjct: 20 ARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVHGR 70
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 30.3 bits (65), Expect = 0.088
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 39 FGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 149
FG ++S+K ++ E KG+GF CF + A ++ M
Sbjct: 319 FGKVSSSKAIIDMETNLCKGYGFACFEEEKSALICISAM 357
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 29.9 bits (64), Expect = 0.12
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVM-LED-GRSKGFGFVCFSSPEEATKAV 140
L++ F G I ++M ED G+ KGFGFV F + KA+
Sbjct: 244 LKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAM 286
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 29.9 bits (64), Expect = 0.12
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 84 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 224
S GFGFV F A A+ MNG ++ L + L+ + D A +
Sbjct: 664 SMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEV 710
Score = 29.1 bits (62), Expect = 0.20
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 72 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV--ALAQRKEDRK 215
++G S+ F F+ F + E+A KA+ +N V T + V AL R + K
Sbjct: 41 KEGVSRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEVHRALDYRSANEK 90
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 29.1 bits (62), Expect = 0.20
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -1
Query: 131 CGFFRR*KTYESKTFAATILQHDLSRSNSSERCKFFTKASCR 6
C FFR+ K I HDL + CK+F K +C+
Sbjct: 41 CKFFRQGTCTSGKN---CIFSHDLELATEKTICKYFQKGNCK 79
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 29.1 bits (62), Expect = 0.20
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 30 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 173
FA FG + + + L+ G KG+ + +++ E+A KAV E N ++ K
Sbjct: 30 FADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLDEK 79
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 27.9 bits (59), Expect = 0.47
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNG 155
LR F FG I + E GR+KGF FV + + A KA ++G
Sbjct: 218 LRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDG 265
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 27.5 bits (58), Expect = 0.62
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 72 EDGRSKGFGFVCFSSPEEATKAVTEMNG 155
++G +G F F SPEEA V +NG
Sbjct: 268 DNGVFRGLAFANFHSPEEAKTVVQVLNG 295
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 1.1
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -3
Query: 330 QEVWCEQSILLHYLVGISDPFVAYAYLPCVACTVKSNGLC 211
+E+W E L H LVG C CT+ S GLC
Sbjct: 192 KELWFE---LNHTLVGFGQTICLPRGRRCDMCTLSSKGLC 228
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 1.4
Identities = 13/52 (25%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Frame = +3
Query: 48 ITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 197
+TS +++++ RS+GFG+V F + + + A+ ++G + +P+ + +A+
Sbjct: 118 VTSIRLVIDPLTERSRGFGYVEFETADTLSAALA-LSGEDLMGRPVRITVAE 168
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 25.8 bits (54), Expect = 1.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 72 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 185
++G +G F F PEEA V +NG + + L V
Sbjct: 238 DNGIFRGLAFANFYRPEEAQVVVQTLNGYEINGRRLRV 275
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 24.6 bits (51), Expect = 4.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 309 SILLHYLVGISDPFVAYAYLPCVACTVKSNG 217
S+L Y+V ++ VA +P V VKSNG
Sbjct: 770 SLLEDYVVYLTSKTVAPENVPAVISIVKSNG 800
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 23.8 bits (49), Expect = 7.6
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 24 KEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 143
K+ P TS + DGR K + + +PE+ T V+
Sbjct: 543 KDTIPSRFKTSISTEVHDGRLKKYPYYHVKTPEKGTTVVS 582
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 23.8 bits (49), Expect = 7.6
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 72 EDGRSKGFGFVCFSSPEEATKAVTEM 149
E G+SKGF F+ + AV M
Sbjct: 67 ETGKSKGFAFLKYEDQRSTVLAVDNM 92
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 23.8 bits (49), Expect = 7.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 231 VKSNGLCGLPCVELKQHKEVLFQ 163
+KSNG GLP V +K L Q
Sbjct: 789 IKSNGFKGLPIVVIKSITRQLIQ 811
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,459,776
Number of Sequences: 5004
Number of extensions: 27500
Number of successful extensions: 106
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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