Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_B24
(344 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 112 6e-26
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 112 6e-26
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 108 1e-24
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 108 1e-24
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 108 1e-24
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 106 4e-24
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 54 2e-08
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 54 2e-08
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 54 2e-08
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 54 2e-08
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 51 2e-07
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 51 3e-07
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 51 3e-07
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 51 3e-07
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 51 3e-07
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 51 3e-07
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 49 1e-06
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 49 1e-06
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 49 1e-06
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 48 2e-06
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 44 2e-05
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 44 2e-05
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 44 2e-05
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 43 5e-05
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 43 5e-05
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 41 2e-04
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 40 4e-04
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 40 6e-04
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 40 6e-04
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 40 6e-04
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 40 6e-04
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 40 6e-04
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 39 8e-04
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 39 0.001
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 38 0.001
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 38 0.001
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 38 0.003
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 36 0.006
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 36 0.006
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 36 0.006
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 36 0.008
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 36 0.008
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 36 0.010
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 35 0.018
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 35 0.018
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 35 0.018
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 34 0.031
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 34 0.031
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 34 0.031
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 34 0.031
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 34 0.031
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 34 0.031
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 34 0.031
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 34 0.031
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 33 0.042
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 33 0.042
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 33 0.042
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 33 0.042
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 33 0.042
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 33 0.042
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 33 0.055
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 33 0.055
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 33 0.055
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 33 0.055
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 33 0.073
Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical pr... 33 0.073
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 32 0.096
AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical ... 32 0.096
Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical pr... 31 0.17
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 31 0.22
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 31 0.22
Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical pr... 30 0.51
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 30 0.51
AL021481-5|CAA16336.2| 455|Caenorhabditis elegans Hypothetical ... 29 0.68
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z29094-7|CAA82342.2| 453|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z70285-3|CAE17840.1| 214|Caenorhabditis elegans Hypothetical pr... 27 3.6
U61949-7|AAB03155.1| 510|Caenorhabditis elegans Hypothetical pr... 27 3.6
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 27 3.6
AC006625-10|AAK68271.1| 325|Caenorhabditis elegans Hypothetical... 27 3.6
Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical pr... 27 4.8
AL033508-4|CAE45091.1| 430|Caenorhabditis elegans Hypothetical ... 27 4.8
Z75545-6|CAA99888.3| 649|Caenorhabditis elegans Hypothetical pr... 26 6.3
U21323-13|AAA62547.2| 284|Caenorhabditis elegans Hypothetical p... 26 6.3
AL008986-2|CAA15621.3| 649|Caenorhabditis elegans Hypothetical ... 26 6.3
AF067211-3|ABC71845.1| 720|Caenorhabditis elegans Hypothetical ... 26 6.3
AF067211-2|AAC16990.3| 745|Caenorhabditis elegans Hypothetical ... 26 6.3
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 26 8.3
Z74036-3|CAA98488.1| 517|Caenorhabditis elegans Hypothetical pr... 26 8.3
AF125960-4|AAD14738.1| 292|Caenorhabditis elegans Hypothetical ... 26 8.3
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 112 bits (270), Expect = 6e-26
Identities = 53/71 (74%), Positives = 61/71 (85%), Gaps = 1/71 (1%)
Frame = +3
Query: 15 GLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
GLR F+ FGTITSAKVM+ E+GRSKGFGFVCF PEEAT AVT+MN +++G KPLYVAL
Sbjct: 358 GLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVAL 417
Query: 192 AQRKEDRKAHL 224
AQRKEDR+A L
Sbjct: 418 AQRKEDRRAQL 428
Score = 53.2 bits (122), Expect = 5e-08
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Frame = +3
Query: 30 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIV-GTK-PLYVALAQR 200
F+ FG ITSA VM + G+ KGFGFV F+ + A +AV ++N I+ GT L V AQ+
Sbjct: 258 FSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQK 317
Query: 201 KEDRKAHL 224
K +R A L
Sbjct: 318 KSERSAEL 325
Score = 50.8 bits (116), Expect = 3e-07
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 30 FAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 206
F+ FG I S KV +D G SKG+GFV F + A A+ ++NG ++ K +YV Q +
Sbjct: 165 FSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRA 224
Query: 207 DRKAHL 224
R L
Sbjct: 225 QRMKEL 230
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 112 bits (270), Expect = 6e-26
Identities = 53/71 (74%), Positives = 61/71 (85%), Gaps = 1/71 (1%)
Frame = +3
Query: 15 GLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
GLR F+ FGTITSAKVM+ E+GRSKGFGFVCF PEEAT AVT+MN +++G KPLYVAL
Sbjct: 358 GLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVAL 417
Query: 192 AQRKEDRKAHL 224
AQRKEDR+A L
Sbjct: 418 AQRKEDRRAQL 428
Score = 53.2 bits (122), Expect = 5e-08
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Frame = +3
Query: 30 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIV-GTK-PLYVALAQR 200
F+ FG ITSA VM + G+ KGFGFV F+ + A +AV ++N I+ GT L V AQ+
Sbjct: 258 FSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQK 317
Query: 201 KEDRKAHL 224
K +R A L
Sbjct: 318 KSERSAEL 325
Score = 50.8 bits (116), Expect = 3e-07
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 30 FAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 206
F+ FG I S KV +D G SKG+GFV F + A A+ ++NG ++ K +YV Q +
Sbjct: 165 FSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRA 224
Query: 207 DRKAHL 224
R L
Sbjct: 225 QRMKEL 230
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 108 bits (259), Expect = 1e-24
Identities = 58/113 (51%), Positives = 71/113 (62%), Gaps = 5/113 (4%)
Frame = +3
Query: 15 GLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
GL+K+F +G ITSAKVM E+GRSKGFGFVCF PEEAT AVTEMN ++V +KPLYVA+
Sbjct: 272 GLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAI 331
Query: 192 AQRKEDRKAHLTXXXXXXXXXXXXXX---XXXIFQPSSAG-GYFVRTIPPAQR 338
AQRKEDR+A L ++ P+ G GY+V QR
Sbjct: 332 AQRKEDRRAQLASQYMQRLASMRMHGNVPGAAMYNPTQPGPGYYVANPMQQQR 384
Score = 66.9 bits (156), Expect = 4e-12
Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM-NGRIVGTK-PLYVAL 191
L K FA FG ITS +VM +G+SKGFGFV F++PEEA AV + + I GT L+V
Sbjct: 169 LEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 228
Query: 192 AQRKEDRKAHL 224
AQ+K +R A L
Sbjct: 229 AQKKSERHAEL 239
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 108 bits (259), Expect = 1e-24
Identities = 58/113 (51%), Positives = 71/113 (62%), Gaps = 5/113 (4%)
Frame = +3
Query: 15 GLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
GL+K+F +G ITSAKVM E+GRSKGFGFVCF PEEAT AVTEMN ++V +KPLYVA+
Sbjct: 269 GLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAI 328
Query: 192 AQRKEDRKAHLTXXXXXXXXXXXXXX---XXXIFQPSSAG-GYFVRTIPPAQR 338
AQRKEDR+A L ++ P+ G GY+V QR
Sbjct: 329 AQRKEDRRAQLASQYMQRLASMRMHGNVPGAAMYNPTQPGPGYYVANPMQQQR 381
Score = 66.9 bits (156), Expect = 4e-12
Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM-NGRIVGTK-PLYVAL 191
L K FA FG ITS +VM +G+SKGFGFV F++PEEA AV + + I GT L+V
Sbjct: 166 LEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 225
Query: 192 AQRKEDRKAHL 224
AQ+K +R A L
Sbjct: 226 AQKKSERHAEL 236
Score = 52.4 bits (120), Expect = 8e-08
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +3
Query: 30 FAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 206
F+ FG I S KV + EDG SKG+GFV F + E A A+ ++NG ++ K ++V Q +
Sbjct: 77 FSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRA 136
Query: 207 DRKAHL 224
R L
Sbjct: 137 QRNREL 142
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 108 bits (259), Expect = 1e-24
Identities = 58/113 (51%), Positives = 71/113 (62%), Gaps = 5/113 (4%)
Frame = +3
Query: 15 GLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
GL+K+F +G ITSAKVM E+GRSKGFGFVCF PEEAT AVTEMN ++V +KPLYVA+
Sbjct: 332 GLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAI 391
Query: 192 AQRKEDRKAHLTXXXXXXXXXXXXXX---XXXIFQPSSAG-GYFVRTIPPAQR 338
AQRKEDR+A L ++ P+ G GY+V QR
Sbjct: 392 AQRKEDRRAQLASQYMQRLASMRMHGNVPGAAMYNPTQPGPGYYVANPMQQQR 444
Score = 66.9 bits (156), Expect = 4e-12
Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM-NGRIVGTK-PLYVAL 191
L K FA FG ITS +VM +G+SKGFGFV F++PEEA AV + + I GT L+V
Sbjct: 229 LEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 288
Query: 192 AQRKEDRKAHL 224
AQ+K +R A L
Sbjct: 289 AQKKSERHAEL 299
Score = 52.4 bits (120), Expect = 8e-08
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +3
Query: 30 FAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 206
F+ FG I S KV + EDG SKG+GFV F + E A A+ ++NG ++ K ++V Q +
Sbjct: 140 FSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRA 199
Query: 207 DRKAHL 224
R L
Sbjct: 200 QRNREL 205
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 106 bits (255), Expect = 4e-24
Identities = 57/113 (50%), Positives = 70/113 (61%), Gaps = 5/113 (4%)
Frame = +3
Query: 15 GLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
GL+K+F +G ITSAKVM E+GRSKGFGFVCF PEEAT AVTEMN ++V +KPLYVA+
Sbjct: 332 GLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAI 391
Query: 192 AQRKEDRKAHLTXXXXXXXXXXXXXX---XXXIFQPSSAG-GYFVRTIPPAQR 338
QRKEDR+A L ++ P+ G GY+V QR
Sbjct: 392 GQRKEDRRAQLASQYMQRVASMRMHGNVPGAAMYNPTQPGPGYYVANPMQQQR 444
Score = 67.3 bits (157), Expect = 3e-12
Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM-NGRIVGTK-PLYVAL 191
L K FA FG ITS +VM +G+SKGFGFV F++PEEA AV + + I GT L+V
Sbjct: 229 LEKVFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 288
Query: 192 AQRKEDRKAHL 224
AQ+K +R A L
Sbjct: 289 AQKKSERHAEL 299
Score = 52.4 bits (120), Expect = 8e-08
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +3
Query: 30 FAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 206
F+ FG I S KV + EDG SKG+GFV F + E A A+ ++NG ++ K ++V Q +
Sbjct: 140 FSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRA 199
Query: 207 DRKAHL 224
R L
Sbjct: 200 QRNREL 205
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 54.4 bits (125), Expect = 2e-08
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
LR+ F PFG ++ AKV+ + +SKG+GFV + EEA +A+ +MNG+ +G + +
Sbjct: 38 LREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNW 97
Query: 192 AQRK 203
A RK
Sbjct: 98 ATRK 101
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 167
+R+ FA FG IT ++ + +G+ FV F + + A KA+ +MN + VG
Sbjct: 143 IRQGFASFGRITEVRIF----KMQGYAFVKFDNKDAAAKAIVQMNNQDVG 188
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 54.4 bits (125), Expect = 2e-08
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
LR+ F PFG ++ AKV+ + +SKG+GFV + EEA +A+ +MNG+ +G + +
Sbjct: 48 LREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNW 107
Query: 192 AQRK 203
A RK
Sbjct: 108 ATRK 111
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 167
+R+ FA FG IT ++ + +G+ FV F + + A KA+ +MN + VG
Sbjct: 153 IRQGFASFGRITEVRIF----KMQGYAFVKFDNKDAAAKAIVQMNNQDVG 198
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 54.4 bits (125), Expect = 2e-08
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
LR+ F PFG ++ AKV+ + +SKG+GFV + EEA +A+ +MNG+ +G + +
Sbjct: 151 LREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNW 210
Query: 192 AQRK 203
A RK
Sbjct: 211 ATRK 214
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 167
+R+ FA FG IT ++ + +G+ FV F + + A KA+ +MN + VG
Sbjct: 256 IRQGFASFGRITEVRIF----KMQGYAFVKFDNKDAAAKAIVQMNNQDVG 301
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 54.4 bits (125), Expect = 2e-08
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
LR+ F PFG ++ AKV+ + +SKG+GFV + EEA +A+ +MNG+ +G + +
Sbjct: 119 LREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNW 178
Query: 192 AQRK 203
A RK
Sbjct: 179 ATRK 182
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 167
+R+ FA FG IT ++ + +G+ FV F + + A KA+ +MN + VG
Sbjct: 224 IRQGFASFGRITEVRIF----KMQGYAFVKFDNKDAAAKAIVQMNNQDVG 269
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 51.2 bits (117), Expect = 2e-07
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
LR+ F FG ++ AK++ ++ + KG+GFV + E+A +A+ EMNG +G + +
Sbjct: 148 LREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNW 207
Query: 192 AQRKED 209
A RK D
Sbjct: 208 ATRKPD 213
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 50.8 bits (116), Expect = 3e-07
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Frame = +3
Query: 30 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
FAPFG I SAKV ++ SK FGFV + + + AT A++ MNG +G+K L V L
Sbjct: 355 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 410
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 50.8 bits (116), Expect = 3e-07
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Frame = +3
Query: 30 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
FAPFG I SAKV ++ SK FGFV + + + AT A++ MNG +G+K L V L
Sbjct: 519 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
Score = 36.3 bits (80), Expect = 0.006
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Frame = +3
Query: 3 NSARGLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM--NGRIVG-T 170
++ LR+ FA FG I V+ + DG+S+G FV F++ A A EM + + G +
Sbjct: 153 HNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCS 212
Query: 171 KPLYVALAQRKEDR 212
PL V A ++D+
Sbjct: 213 APLVVKFADTQKDK 226
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 50.8 bits (116), Expect = 3e-07
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Frame = +3
Query: 30 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
FAPFG I SAKV ++ SK FGFV + + + AT A++ MNG +G+K L V L
Sbjct: 519 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
Score = 36.3 bits (80), Expect = 0.006
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Frame = +3
Query: 3 NSARGLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM--NGRIVG-T 170
++ LR+ FA FG I V+ + DG+S+G FV F++ A A EM + + G +
Sbjct: 153 HNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCS 212
Query: 171 KPLYVALAQRKEDR 212
PL V A ++D+
Sbjct: 213 APLVVKFADTQKDK 226
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 50.8 bits (116), Expect = 3e-07
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Frame = +3
Query: 30 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
FAPFG I SAKV ++ SK FGFV + + + AT A++ MNG +G+K L V L
Sbjct: 448 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 503
Score = 36.3 bits (80), Expect = 0.006
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Frame = +3
Query: 3 NSARGLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM--NGRIVG-T 170
++ LR+ FA FG I V+ + DG+S+G FV F++ A A EM + + G +
Sbjct: 153 HNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCS 212
Query: 171 KPLYVALAQRKEDR 212
PL V A ++D+
Sbjct: 213 APLVVKFADTQKDK 226
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 50.8 bits (116), Expect = 3e-07
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Frame = +3
Query: 30 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
FAPFG I SAKV ++ SK FGFV + + + AT A++ MNG +G+K L V L
Sbjct: 519 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
Score = 36.3 bits (80), Expect = 0.006
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Frame = +3
Query: 3 NSARGLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM--NGRIVG-T 170
++ LR+ FA FG I V+ + DG+S+G FV F++ A A EM + + G +
Sbjct: 153 HNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCS 212
Query: 171 KPLYVALAQRKEDR 212
PL V A ++D+
Sbjct: 213 APLVVKFADTQKDK 226
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 48.8 bits (111), Expect = 1e-06
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +3
Query: 30 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ-R 200
FAPFG I SAKV ++ +SK FGFV + + + A+T MNG +G K L V L + R
Sbjct: 449 FAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKRPR 508
Query: 201 KEDR 212
E R
Sbjct: 509 NESR 512
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 48.8 bits (111), Expect = 1e-06
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
L+ F FG ++ AKV+ ++ +SKG+GFV F + + A A+ MNG+ +G + +
Sbjct: 151 LKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNW 210
Query: 192 AQRK--EDRKAHLT 227
A RK E+ + LT
Sbjct: 211 AARKNSEENRDKLT 224
Score = 32.3 bits (70), Expect = 0.096
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGR 158
LR F+ +G I ++ +++ + FV + E ATKA+ EMNG+
Sbjct: 253 LRDLFSTYGDIAEVRIF----KTQRYAFVRYEKKECATKAIMEMNGK 295
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 48.8 bits (111), Expect = 1e-06
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +3
Query: 30 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ-R 200
FAPFG I SAKV ++ +SK FGFV + + + A+T MNG +G K L V L + R
Sbjct: 449 FAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKRPR 508
Query: 201 KEDR 212
E R
Sbjct: 509 NESR 512
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 47.6 bits (108), Expect = 2e-06
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
L K F + + AKV+ E +SKG+GFV F E+ +A+ EM+G+ VG +P+ +
Sbjct: 219 LAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLRK 278
Query: 192 AQRKE 206
+ KE
Sbjct: 279 SAWKE 283
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +3
Query: 30 FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA-QRKE 206
F G + +++ + SKGFGFV +P++A +A E NG + + + V LA QR
Sbjct: 2 FEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQRVH 61
Query: 207 DRKA 218
++KA
Sbjct: 62 NKKA 65
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +3
Query: 30 FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA-QRKE 206
F G + +++ + SKGFGFV +P++A +A E NG + + + V LA QR
Sbjct: 120 FEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQRVH 179
Query: 207 DRKA 218
++KA
Sbjct: 180 NKKA 183
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +3
Query: 30 FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA-QRKE 206
F G + +++ + SKGFGFV +P++A +A E NG + + + V LA QR
Sbjct: 120 FEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQRVH 179
Query: 207 DRKA 218
++KA
Sbjct: 180 NKKA 183
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 43.2 bits (97), Expect = 5e-05
Identities = 19/66 (28%), Positives = 36/66 (54%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 197
L+ F FG ++ +++ + SKGFGFV P++A +A E++G ++ + + V A
Sbjct: 169 LKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCAT 228
Query: 198 RKEDRK 215
+ K
Sbjct: 229 ARVHSK 234
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 43.2 bits (97), Expect = 5e-05
Identities = 19/66 (28%), Positives = 36/66 (54%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 197
L+ F FG ++ +++ + SKGFGFV P++A +A E++G ++ + + V A
Sbjct: 169 LKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCAT 228
Query: 198 RKEDRK 215
+ K
Sbjct: 229 ARVHSK 234
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +3
Query: 30 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 200
F+ G I + +++ E GR +GF F+ F+ A +AV +MNG +PL V LA +
Sbjct: 25 FSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLANK 83
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 40.3 bits (90), Expect = 4e-04
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRI 161
L F PFG I +++++ ++ G SKG GFV F +EA A+ +NG I
Sbjct: 144 LESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSI 193
Score = 39.5 bits (88), Expect = 6e-04
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
+R F G I S K++ + G+S G+GFV + E+A +AV+ NG + K + V+
Sbjct: 58 VRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSY 117
Query: 192 AQRKEDR 212
A+ D+
Sbjct: 118 ARPSNDQ 124
Score = 33.9 bits (74), Expect = 0.031
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 30 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 185
F+ FG I + K++ + + KG+ FV S+ EA A+ +NG + K L V
Sbjct: 394 FSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQV 446
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 39.5 bits (88), Expect = 6e-04
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +3
Query: 30 FAPFGTITSA-KVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 200
F+ FG I K+M ++ G SKGF F+ F+S E + A+ MNG+ + + + V+ A +
Sbjct: 120 FSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK 179
Query: 201 KEDR 212
++ +
Sbjct: 180 RDSK 183
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 87 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 206
+GFGFV F E+A A+ +N + KP+ V A E
Sbjct: 54 QGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHE 93
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 39.5 bits (88), Expect = 6e-04
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +3
Query: 30 FAPFGTITSA-KVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 200
F+ FG I K+M ++ G SKGF F+ F+S E + A+ MNG+ + + + V+ A +
Sbjct: 130 FSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK 189
Query: 201 KEDR 212
++ +
Sbjct: 190 RDSK 193
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 87 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 206
+GFGFV F E+A A+ +N + KP+ V A E
Sbjct: 64 QGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHE 103
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 39.5 bits (88), Expect = 6e-04
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 185
LR+ F PFG I S + + G K F FV + PE A A MNG+++G + L V
Sbjct: 118 LRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 39.5 bits (88), Expect = 6e-04
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 185
LR+ F PFG I S + + G K F FV + PE A A MNG+++G + L V
Sbjct: 118 LRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 39.5 bits (88), Expect = 6e-04
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 185
LR+ F PFG I S + + G K F FV + PE A A MNG+++G + L V
Sbjct: 118 LRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 39.1 bits (87), Expect = 8e-04
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
L F PFG + + + + E G+ +GFGFV F E+A A+ MN + K + V
Sbjct: 27 LMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNF 86
Query: 192 AQ 197
A+
Sbjct: 87 AR 88
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 38.7 bits (86), Expect = 0.001
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 18 LRKEFAPFGTITSAK-VMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 194
L+ F+ FGT+TS + V +DG+ KG FV F + A K V + ++ + L VAL+
Sbjct: 699 LKALFSKFGTVTSVRRVTHKDGKPKGIAFVDFDTEASAQKCVASGDKLMLRERELEVALS 758
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 38.3 bits (85), Expect = 0.001
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
LR+ + +G I S K +++ + KG+GFV F SP+ A AV +N G + L
Sbjct: 123 LREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLNTE--GVQAQMAKL 180
Query: 192 AQRKED 209
Q+++D
Sbjct: 181 QQQEQD 186
Score = 30.3 bits (65), Expect = 0.39
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAVTEMNG 155
L E FG + S +++ D +S+G GF S E+ ++ +NG
Sbjct: 204 LETELNKFGMVISTRILRTPDNQSRGVGFARMDSKEKCEVIISALNG 250
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 38.3 bits (85), Expect = 0.001
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
LR+ + +G I S K +++ + KG+GFV F SP+ A AV +N G + L
Sbjct: 97 LREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLNTE--GVQAQMAKL 154
Query: 192 AQRKED 209
Q+++D
Sbjct: 155 QQQEQD 160
Score = 30.3 bits (65), Expect = 0.39
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAVTEMNG 155
L E FG + S +++ D +S+G GF S E+ ++ +NG
Sbjct: 178 LETELNKFGMVISTRILRTPDNQSRGVGFARMDSKEKCEVIISALNG 224
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 37.5 bits (83), Expect = 0.003
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 30 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 203
F+ G +++ +++ E GR +GF FV F+ A +AV + NG + L V LAQ +
Sbjct: 24 FSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLAQNR 83
Query: 204 ED 209
+
Sbjct: 84 NN 85
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 36.3 bits (80), Expect = 0.006
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
LR+ F +G I + + +SKGFGFV F +A A+ +G++V + L V L
Sbjct: 35 LRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTL 94
Query: 192 AQ 197
A+
Sbjct: 95 AK 96
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 36.3 bits (80), Expect = 0.006
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
LR+ F +G I + + +SKGFGFV F +A A+ +G++V + L V L
Sbjct: 35 LRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTL 94
Query: 192 AQ 197
A+
Sbjct: 95 AK 96
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 36.3 bits (80), Expect = 0.006
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Frame = +3
Query: 3 NSARGLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM--NGRIVG-T 170
++ LR+ FA FG I V+ + DG+S+G FV F++ A A EM + + G +
Sbjct: 153 HNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCS 212
Query: 171 KPLYVALAQRKEDR 212
PL V A ++D+
Sbjct: 213 APLVVKFADTQKDK 226
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 35.9 bits (79), Expect = 0.008
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +3
Query: 6 SARGLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 173
+A LR F FG + VM + R++GFGF+ F P K + + G K
Sbjct: 57 TAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKK 114
Score = 34.7 bits (76), Expect = 0.018
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
+++ F +G + A +M + R +GFGFV F S E A K V E++ + K +
Sbjct: 150 MKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADK-VCEIHFHEINGKMVECKK 208
Query: 192 AQRKE 206
AQ KE
Sbjct: 209 AQPKE 213
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 35.9 bits (79), Expect = 0.008
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +3
Query: 6 SARGLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 173
+A LR F FG + VM + R++GFGF+ F P K + + G K
Sbjct: 57 TAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKK 114
Score = 34.7 bits (76), Expect = 0.018
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
+++ F +G + A +M + R +GFGFV F S E A K V E++ + K +
Sbjct: 150 MKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADK-VCEIHFHEINGKMVECKK 208
Query: 192 AQRKE 206
AQ KE
Sbjct: 209 AQPKE 213
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 35.5 bits (78), Expect = 0.010
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 30 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 200
FA G + + +++ E GR +GF FV FS A +AV ++NG + L V A +
Sbjct: 26 FAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYANK 84
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 34.7 bits (76), Expect = 0.018
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 3 NSARGLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 152
++ LR+ FA FG I V+ + DG+S+G FV F++ A A EM+
Sbjct: 153 HNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMH 203
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 34.7 bits (76), Expect = 0.018
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
L F +G + A+V + +GRS+GF FV F++ E A+ I G K + V
Sbjct: 45 LSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKG-KSVEVKP 103
Query: 192 AQRKEDRK 215
A+ +E++K
Sbjct: 104 AKSRENKK 111
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 34.7 bits (76), Expect = 0.018
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
L F +G + A+V + +GRS+GF FV F++ E A+ I G K + V
Sbjct: 45 LSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKG-KSVEVKP 103
Query: 192 AQRKEDRK 215
A+ +E++K
Sbjct: 104 AKSRENKK 111
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 33.9 bits (74), Expect = 0.031
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 12 RGLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 137
+ LR F FG I ++ + G S+GFGF+ F+ E+AT A
Sbjct: 90 KDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIEDATAA 133
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 33.9 bits (74), Expect = 0.031
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 39 FGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 212
FG + + + ++ G SKG+ F + P +A+ +NG +G K L V LA + R
Sbjct: 314 FGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQQR 372
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 33.9 bits (74), Expect = 0.031
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 3 NSARGLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGR-IVGTKPL 179
+S LR F FGT+ +++ G+ +G GFV + E A + + +GR IV + +
Sbjct: 159 HSVDSLRVYFETFGTLDQVEIL---GQPRGLGFVIYEDKESADRCLAHNSGRHIVNERKI 215
Query: 180 YV 185
V
Sbjct: 216 EV 217
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 30 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVG 167
F+ +G + A V+ + S+GFGFV F+S A A+ + ++ G
Sbjct: 69 FSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGG 116
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 33.9 bits (74), Expect = 0.031
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 3 NSARGLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGR-IVGTKPL 179
+S LR F FGT+ +++ G+ +G GFV + E A + + +GR IV + +
Sbjct: 179 HSVDSLRVYFETFGTLDQVEIL---GQPRGLGFVIYEDKESADRCLAHNSGRHIVNERKI 235
Query: 180 YV 185
V
Sbjct: 236 EV 237
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 30 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVG 167
F+ +G + A V+ + S+GFGFV F+S A A+ + ++ G
Sbjct: 89 FSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGG 136
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 33.9 bits (74), Expect = 0.031
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 3 NSARGLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGR-IVGTKPL 179
+S LR F FGT+ +++ G+ +G GFV + E A + + +GR IV + +
Sbjct: 180 HSVDSLRVYFETFGTLDQVEIL---GQPRGLGFVIYEDKESADRCLAHNSGRHIVNERKI 236
Query: 180 YV 185
V
Sbjct: 237 EV 238
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 30 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVG 167
F+ +G + A V+ + S+GFGFV F+S A A+ + ++ G
Sbjct: 90 FSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGG 137
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 33.9 bits (74), Expect = 0.031
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 39 FGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 212
FG + + + ++ G SKG+ F + P +A+ +NG +G K L V LA + R
Sbjct: 314 FGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQQR 372
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 33.9 bits (74), Expect = 0.031
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 39 FGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 212
FG + + + ++ G SKG+ F + P +A+ +NG +G K L V LA + R
Sbjct: 289 FGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQQR 347
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 33.9 bits (74), Expect = 0.031
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 39 FGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 212
FG + + + ++ G SKG+ F + P +A+ +NG +G K L V LA + R
Sbjct: 292 FGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQQR 350
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 33.5 bits (73), Expect = 0.042
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +3
Query: 72 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 206
+ G KGF +V F + ++ A++ +NG G + L V AQ+++
Sbjct: 48 DSGSFKGFAYVTFENEQQMNTAISGLNGADFGNRVLKVNRAQQRD 92
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 33.5 bits (73), Expect = 0.042
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 30 FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKA 137
F +G + S +++ D SKGFGFV S E KA
Sbjct: 71 FFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKA 106
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 33.5 bits (73), Expect = 0.042
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +3
Query: 3 NSARGLRKEF-APFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 146
N+ L +EF + FG IT VM + RS+GFGFV FS E A+ +
Sbjct: 33 NTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Score = 33.1 bits (72), Expect = 0.055
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIVG 167
L + F +GT+T ++++L+ K GFGFV F + + V + + + G
Sbjct: 130 LTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNG 181
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 33.5 bits (73), Expect = 0.042
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +3
Query: 3 NSARGLRKEF-APFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 146
N+ L +EF + FG IT VM + RS+GFGFV FS E A+ +
Sbjct: 33 NTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Score = 33.1 bits (72), Expect = 0.055
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIVG 167
L + F +GT+T ++++L+ K GFGFV F + + V + + + G
Sbjct: 130 LTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNG 181
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 33.5 bits (73), Expect = 0.042
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +3
Query: 3 NSARGLRKEF-APFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 146
N+ L +EF + FG IT VM + RS+GFGFV FS E A+ +
Sbjct: 33 NTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Score = 33.1 bits (72), Expect = 0.055
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIVG 167
L + F +GT+T ++++L+ K GFGFV F + + V + + + G
Sbjct: 130 LTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNG 181
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 33.5 bits (73), Expect = 0.042
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 30 FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKA 137
F +G + S +++ D SKGFGFV S E KA
Sbjct: 71 FFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKA 106
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 33.1 bits (72), Expect = 0.055
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEA 128
LR+ F F + K++ DG+SKG+GF+ F + ++A
Sbjct: 82 LREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQA 119
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 33.1 bits (72), Expect = 0.055
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 146
+R+ ++ FG IT VM + RS+GFGFV FS E A+ +
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 45
Score = 33.1 bits (72), Expect = 0.055
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIVG 167
L + F +GT+T ++++L+ K GFGFV F + + V + + + G
Sbjct: 92 LTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNG 143
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 33.1 bits (72), Expect = 0.055
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 146
+R+ ++ FG IT VM + RS+GFGFV FS E A+ +
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 45
Score = 33.1 bits (72), Expect = 0.055
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIVG 167
L + F +GT+T ++++L+ K GFGFV F + + V + + + G
Sbjct: 92 LTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNG 143
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 33.1 bits (72), Expect = 0.055
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEA 128
LR+ F F + K++ DG+SKG+GF+ F + ++A
Sbjct: 83 LREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQA 120
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 32.7 bits (71), Expect = 0.073
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNG 155
+R F+ G + S K++ E G+ KG+GF+ F + A A+ +NG
Sbjct: 34 IRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNLNG 81
>Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical
protein F44G4.4a protein.
Length = 411
Score = 32.7 bits (71), Expect = 0.073
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 21 RKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAV 140
+K F GT+ ++ + DG SKGFGFV SS E K +
Sbjct: 190 QKYFEDIGTVVFCEIKRKSDGNSKGFGFVRMSSVGEQNKVL 230
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 32.3 bits (70), Expect = 0.096
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM-NGRIVGTKPLYVA 188
+++E + FG I A + + G SKG FV FS+P EA+ + + +G I+ + +
Sbjct: 279 IKEELSKFGKIDLAIICKYKDSGHSKGTAFVHFSTPIEASNCIEGVEDGVIIDNRLVKAN 338
Query: 189 LA-QRKE 206
LA RKE
Sbjct: 339 LAIPRKE 345
>AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical
protein ZK616.1 protein.
Length = 491
Score = 32.3 bits (70), Expect = 0.096
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +3
Query: 30 FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 197
+ FG IT V + G+GFV F + A K + EM+G+ + K + V+ A+
Sbjct: 113 YQAFGGITDGVVQCHV--ADGYGFVLFDTRANAQKKIVEMDGKTLNGKLISVSWAR 166
>Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical
protein T07F10.3 protein.
Length = 371
Score = 31.5 bits (68), Expect = 0.17
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 194
L + F + + AK+ DG SKG GFV F + + A+ EM+ VG + + LA
Sbjct: 172 LYRIFDKYQSCRGAKMFRFVDGSSKGSGFVRFGNQTDQQMALVEMHRTKVGGCRIILKLA 231
Query: 195 QRKEDR 212
+ +R
Sbjct: 232 GSRGER 237
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 31.1 bits (67), Expect = 0.22
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 78 GRSKGFGFVCFSSPEEATKAVTEMN 152
G KGF FV F S ++A +A+ E+N
Sbjct: 214 GLPKGFAFVTFESRDDAARAIAELN 238
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 31.1 bits (67), Expect = 0.22
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 30 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNG 155
F+ +G + + ++ + G+SKGF F+C+ AV NG
Sbjct: 58 FSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNFNG 101
>Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical
protein C25A1.4 protein.
Length = 454
Score = 29.9 bits (64), Expect = 0.51
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 191
L + F G IT ++ +G+SKG + ++ P EA +AV+ +NG+ + + L V +
Sbjct: 204 LYEVFGMAGKITWMDFRIDKEGKSKGVCVIQYTHPIEAVQAVSMLNGQRLFDRNLVVKM 262
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 29.9 bits (64), Expect = 0.51
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +3
Query: 6 SARGLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 173
S + L + F FG I A V+ + +S+G+GFV A +A + N I G K
Sbjct: 47 SDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDPNPIIDGRK 104
>AL021481-5|CAA16336.2| 455|Caenorhabditis elegans Hypothetical
protein Y43F4B.7 protein.
Length = 455
Score = 29.5 bits (63), Expect = 0.68
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 227 SQMGFA-VFLALS*SNIKRFCSNNTSIHFS 141
SQ+GF V+ N++ F +NNTSIH S
Sbjct: 151 SQLGFCCVYFVFMADNLEDFFNNNTSIHLS 180
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +3
Query: 6 SARGLRKEFAPFGTITSAKVMLEDGRS---KGFGFVCFSSPEEATKA 137
S + + F FG + + ++ + G+ +GFGFV F S +EA +A
Sbjct: 760 SVKEVETLFETFGAVKTIRIPKKPGQKQQHRGFGFVDFISADEAHRA 806
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 90 GFGFVCFSSPEEATKAVTEMNGRIVG 167
GFGFV F +A AV ++NG+ +G
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELG 62
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 90 GFGFVCFSSPEEATKAVTEMNGRIVG 167
GFGFV F +A AV ++NG+ +G
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELG 62
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 90 GFGFVCFSSPEEATKAVTEMNGRIVG 167
GFGFV F +A AV ++NG+ +G
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELG 62
>Z29094-7|CAA82342.2| 453|Caenorhabditis elegans Hypothetical
protein C07A9.8 protein.
Length = 453
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -1
Query: 185 NIKRFCSNNTSIHFSNRFCGFFRR*KTYESKTFAATILQHDLSRSNS 45
NI R+C + + F + G RR T E+ A +L H+L + NS
Sbjct: 170 NIIRYCVISQCLVFRDIHVGVRRRFPTLEAVAQAGIMLPHELEKFNS 216
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 90 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 203
GFGFV F +A AV ++NG+ + + + + +RK
Sbjct: 36 GFGFVDFQDQRDADDAVHDLNGKELCGERVILEFPRRK 73
>Z70285-3|CAE17840.1| 214|Caenorhabditis elegans Hypothetical
protein F56C4.3 protein.
Length = 214
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -1
Query: 101 ESKTFAATILQHDLSRSNSSERCKFFTKASCR 6
+S+ ++ +QH S ++S+ C FF K C+
Sbjct: 179 DSRKYSLPAIQHKESNASSANVCVFFDKEYCQ 210
>U61949-7|AAB03155.1| 510|Caenorhabditis elegans Hypothetical
protein F49E8.7a protein.
Length = 510
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 138 PLLWLLQEMKNIRIQNLC-CDHPPT*P 61
PLLW+ ++ + IQN C CD PP P
Sbjct: 175 PLLWMKAGIEKL-IQNNCQCDQPPIVP 200
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 30 FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 155
F PFG I + + +GFGFV F+ A ++ +NG
Sbjct: 104 FRPFGKIIAVNYFAQ----QGFGFVQFNEAGSADESCRSLNG 141
>AC006625-10|AAK68271.1| 325|Caenorhabditis elegans Hypothetical
protein C55B7.11 protein.
Length = 325
Score = 27.1 bits (57), Expect = 3.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 107 TYESKTFAATILQHDLSRSNSSERC 33
+Y+ T+ ++Q+D +R NS RC
Sbjct: 184 SYKKFTYFTALIQYDFARCNSETRC 208
>Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical
protein R09A8.1 protein.
Length = 1095
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 158 YCWNKTSLCCFSSTQGRPQSPFDFTVHATHGKYAYATNGS 277
YC T++ FSSTQ + F TV + +Y+ T+ +
Sbjct: 563 YCEFATNVIYFSSTQNASEEDFGNTVSSDVSQYSARTSNN 602
>AL033508-4|CAE45091.1| 430|Caenorhabditis elegans Hypothetical
protein Y106G6G.6 protein.
Length = 430
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 321 WCEQSILLHYLVGISDPFVAYAYLPCVACTV 229
WC ++ YL S P ++ + L CV C V
Sbjct: 218 WCAIDVISSYLRIDSPPVLSSSILECVPCVV 248
>Z75545-6|CAA99888.3| 649|Caenorhabditis elegans Hypothetical
protein H37N21.1 protein.
Length = 649
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 321 WCEQSI-LLHYLVGISDPFVAYAYLPCVACTVKSNGLCGLPCV 196
W Q + L+YL SDP + + L C ++ NGL + CV
Sbjct: 157 WTTQILSALNYLHS-SDPPIIHGNLTCNTVFIQQNGLIKIGCV 198
>U21323-13|AAA62547.2| 284|Caenorhabditis elegans Hypothetical
protein C45G9.2 protein.
Length = 284
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +3
Query: 75 DGRSKGFGFVCFSSPEEATKAVTEMNGRI 161
D RSKGFG S PE V + RI
Sbjct: 87 DVRSKGFGSALLSKPELLADMVRQTRARI 115
>AL008986-2|CAA15621.3| 649|Caenorhabditis elegans Hypothetical
protein H37N21.1 protein.
Length = 649
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 321 WCEQSI-LLHYLVGISDPFVAYAYLPCVACTVKSNGLCGLPCV 196
W Q + L+YL SDP + + L C ++ NGL + CV
Sbjct: 157 WTTQILSALNYLHS-SDPPIIHGNLTCNTVFIQQNGLIKIGCV 198
>AF067211-3|ABC71845.1| 720|Caenorhabditis elegans Hypothetical
protein B0205.1b protein.
Length = 720
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -1
Query: 182 IKRFCSNNTSIHFSNRFCGFFRR*KTYESKTFA--ATILQHDLSRSNSSE 39
I R+ SNN + S + G RR T SKT +++ +LS + E
Sbjct: 464 IVRYTSNNGKVELSEKRSGVKRRSSTKSSKTLGKRRQVIEKELSDLDEPE 513
>AF067211-2|AAC16990.3| 745|Caenorhabditis elegans Hypothetical
protein B0205.1a protein.
Length = 745
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -1
Query: 182 IKRFCSNNTSIHFSNRFCGFFRR*KTYESKTFA--ATILQHDLSRSNSSE 39
I R+ SNN + S + G RR T SKT +++ +LS + E
Sbjct: 489 IVRYTSNNGKVELSEKRSGVKRRSSTKSSKTLGKRRQVIEKELSDLDEPE 538
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 25.8 bits (54), Expect = 8.3
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = +3
Query: 18 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE----MNGRIVGTKPL 179
L F +G+I S + + G +GF + F S + A KA+ + ++G V +P
Sbjct: 41 LEHYFKRYGSIQSVNMFYDPDTGLHRGFASITFDSKDGANKAIEQRPHVIDGDRVDVEPY 100
Query: 180 YVALAQRKE 206
+++ K+
Sbjct: 101 IPLISKNKK 109
>Z74036-3|CAA98488.1| 517|Caenorhabditis elegans Hypothetical
protein F55C10.4 protein.
Length = 517
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -3
Query: 270 FVAYAYLPCVACTVKSNGLC-GLPCVELKQHKEVLFQQYVHSF 145
F+ + + C +K LC G VE K HK + QY H+F
Sbjct: 13 FIIFTFFCVTFCFLK---LCLGENGVEKKNHKTIEAYQYTHTF 52
>AF125960-4|AAD14738.1| 292|Caenorhabditis elegans Hypothetical
protein T12B3.4 protein.
Length = 292
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -2
Query: 136 AFVASSGDEKHTNPKPL 86
A V+S GDEK +P+PL
Sbjct: 40 AIVSSGGDEKRKDPQPL 56
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,271,660
Number of Sequences: 27780
Number of extensions: 157668
Number of successful extensions: 513
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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