Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B24
         (344 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.4  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   5.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   7.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   7.2  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 304 PPALLGWNI 278
           PP LLGWN+
Sbjct: 17  PPRLLGWNV 25


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +2

Query: 77   WSQQRFWIRM 106
            W+++RFW R+
Sbjct: 1191 WNEKRFWERL 1200


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 262 IRILAMRCMYCEVK 221
           +RI   RC YC +K
Sbjct: 64  LRINRNRCQYCRLK 77


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 262 IRILAMRCMYCEVK 221
           +RI   RC YC +K
Sbjct: 113 LRINRNRCQYCRLK 126


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 306 YFVRTIPP 329
           YF RT+PP
Sbjct: 114 YFARTVPP 121


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 306 YFVRTIPP 329
           YF RT+PP
Sbjct: 204 YFARTVPP 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,310
Number of Sequences: 438
Number of extensions: 1775
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)