Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_B23
(246 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1324 - 35702184-35702267,35702405-35702476,35702675-357027... 54 1e-08
01_06_1700 + 39282713-39282833,39283184-39283305,39283650-392838... 33 0.024
06_01_0766 - 5729550-5731057,5731248-5731515 31 0.17
04_01_0387 - 5116673-5117968 26 4.9
03_05_1016 + 29726949-29727503,29728863-29729504 26 4.9
09_05_0005 + 20026190-20026343,20026483-20026682,20026918-200273... 25 6.4
03_03_0247 - 15801705-15802478,15802558-15802728,15802886-15803047 25 6.4
01_02_0026 - 10314159-10314413,10315263-10315341,10316347-10316585 25 6.4
07_03_0544 + 19309026-19310105 25 8.5
05_01_0198 + 1429396-1430640 25 8.5
03_02_0940 + 12583131-12583280,12583805-12583996,12584185-125843... 25 8.5
>02_05_1324 -
35702184-35702267,35702405-35702476,35702675-35702740,
35702826-35702857,35702941-35703100,35703254-35703389,
35703453-35703598,35703827-35704072,35704152-35704259,
35704436-35704557,35704730-35704820,35704903-35705133,
35705212-35705355,35705875-35705951,35706158-35706281,
35706368-35706535,35706625-35706948
Length = 776
Score = 54.4 bits (125), Expect = 1e-08
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +3
Query: 18 SDQDVISVGQRYRDTFLAVGGSCHPSEVFRRFRGRDPSPHALLKNLGL 161
+++ + G+R+R+T LA+GG P EVF FRGR+PSP ALL++ GL
Sbjct: 723 NEKAIEETGRRFRETVLALGGGKSPLEVFVSFRGREPSPEALLRHNGL 770
>01_06_1700 +
39282713-39282833,39283184-39283305,39283650-39283813,
39284762-39284780,39284927-39285106,39285355-39285432,
39285578-39285658,39286010-39286102,39286321-39286401,
39286499-39286661,39286778-39286898,39287183-39287255,
39287528-39287635,39287922-39288019,39288106-39288151,
39288514-39288610,39288940-39289013,39289092-39289196,
39289284-39289364,39289446-39289556
Length = 671
Score = 33.5 bits (73), Expect = 0.024
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +3
Query: 42 GQRYRDTFLAVGGSCHPSEVFRRFRGRDPSPHALLKN 152
G R+R+ LA GGS +P ++ + GR+PS A +++
Sbjct: 629 GLRFRNKVLAPGGSKNPLDIISDYLGREPSLQAFIQS 665
>06_01_0766 - 5729550-5731057,5731248-5731515
Length = 591
Score = 30.7 bits (66), Expect = 0.17
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = +3
Query: 78 GSCHP---SEVFRRFRGRDPSPHALLK 149
GSCH S ++RR GR+PSPH + K
Sbjct: 119 GSCHSRYQSAMYRRNAGREPSPHLVSK 145
>04_01_0387 - 5116673-5117968
Length = 431
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 166 LGKPRFFNSACGDGSLP 116
L +P F +CGDGSLP
Sbjct: 181 LPRPSVFPVSCGDGSLP 197
>03_05_1016 + 29726949-29727503,29728863-29729504
Length = 398
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 122 PPSEPPEHFARMTTSTDR*ERVSVSLTDGDHILVTSPCPR 3
PP PPE R T D RV ++ DG+ + S PR
Sbjct: 82 PPPPPPEGLERWTRGPD---RVEHAMADGELLWRASFVPR 118
>09_05_0005 +
20026190-20026343,20026483-20026682,20026918-20027309,
20027646-20027778,20027858-20027942,20028216-20028235
Length = 327
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 145 NSACGDGSLPRNRLNTSLG 89
+S CG S+P R N+S+G
Sbjct: 164 DSMCGSSSMPHRRRNSSVG 182
>03_03_0247 - 15801705-15802478,15802558-15802728,15802886-15803047
Length = 368
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 90 PSEVFRRFRGRDPSPHALLKNLGLPKDVEE*NNNRVR 200
P ++ RR R P P L+K LG P E N R
Sbjct: 145 PEQLQRRRRRGSPFPSLLVKWLGAPMRPEHEGRNSAR 181
>01_02_0026 - 10314159-10314413,10315263-10315341,10316347-10316585
Length = 190
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +3
Query: 45 QRYRDTFLAVGGSCHPSEVFRRFRGRDPSPHALLKNLGL 161
Q + D A G H R RG P+P LKN L
Sbjct: 55 QTWSDEAKASNGEAHLLPELRSSRGGKPTPTLFLKNFHL 93
>07_03_0544 + 19309026-19310105
Length = 359
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 196 TRLLFYSSTSLGKPRFFNSAC 134
T+ +Y++ SL +PR F AC
Sbjct: 59 TKFCYYNNYSLSQPRHFCKAC 79
>05_01_0198 + 1429396-1430640
Length = 414
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 66 LAVGGSCHP--SEVFRRFRGRDPSPHALLKNLGLPKDVE 176
+A G C P +++ RG PSP + ++L LP++ E
Sbjct: 280 IAAKGECSPCAADLSPVARGEPPSPGYIWEDLDLPEEWE 318
>03_02_0940 +
12583131-12583280,12583805-12583996,12584185-12584350,
12584774-12584801,12585525-12585594,12586399-12586435,
12587760-12588148
Length = 343
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 6 RARTSDQDVISVGQRYRDTFLAVGGSCHPSEVFRR 110
R S D+++V R D+ +A+GG +P E+ RR
Sbjct: 95 RQTVSCADILAVAAR--DSVVALGGPSYPVELGRR 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,873,027
Number of Sequences: 37544
Number of extensions: 130112
Number of successful extensions: 311
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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