Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B23
         (246 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   3.9  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    19   6.9  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    19   6.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   9.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    19   9.1  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 126 PSPHALLKNLGLPKDVE 176
           P P+  L+NLG   D+E
Sbjct: 46  PIPNQELQNLGASYDIE 62


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 78  GSCHPSEVFRRFRGR 122
           G C  +E+F R  GR
Sbjct: 35  GKCPSNEIFSRCDGR 49


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 78  GSCHPSEVFRRFRGR 122
           G C  +E+F R  GR
Sbjct: 35  GKCPSNEIFSRCDGR 49


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.0 bits (37), Expect = 9.1
 Identities = 6/20 (30%), Positives = 10/20 (50%)
 Frame = +2

Query: 23   PRCDLRRSEIQRHVLSGRWK 82
            P   +R  ++ +H L   WK
Sbjct: 979  PPTSIRVDDLDQHTLKVTWK 998


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.0 bits (37), Expect = 9.1
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 51  YRDTFLAVGGSCHPSEVFRRFR 116
           +R  F+ +  +C P  V RR++
Sbjct: 397 FRRAFVRILCACCPGRVRRRYQ 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,957
Number of Sequences: 438
Number of extensions: 1199
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4275738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)