Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_B21
(421 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom... 95 5e-21
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch... 49 3e-07
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 27 1.2
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 26 2.1
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 2.1
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 26 2.7
SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c... 25 3.6
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe... 25 4.8
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 25 4.8
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 24 8.4
>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 94.7 bits (225), Expect = 5e-21
Identities = 49/114 (42%), Positives = 72/114 (63%), Gaps = 1/114 (0%)
Frame = +2
Query: 83 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQ-ASKSKM 259
++LS +GLR DGRR +E+R +C++G+ +GSA++E GNTKV V GP + KSK
Sbjct: 5 EILSLEGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKA 64
Query: 260 STDGVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTELYPRS 421
D VN + ++A+FST + K R + DR+ Q + L+ I+TELYPRS
Sbjct: 65 RADRTFVNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRS 118
>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 257
Score = 48.8 bits (111), Expect = 3e-07
Identities = 30/101 (29%), Positives = 51/101 (50%)
Frame = +2
Query: 119 RRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVNCQYSM 298
R + R+I KLG T+ GS+Y E K+ V GP + SK+ +NC++ +
Sbjct: 30 RDVDRCRKIYLKLGWATKAVGSSYFESEKIKIACTVSGP-RPSKTFAFRSSAKLNCEFRL 88
Query: 299 ATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTELYPRS 421
+ FST R+ + + + S + A++ +I LYP+S
Sbjct: 89 SPFSTSVRQGHVQ-TVEEKSYSQMIEAAISPSILLHLYPKS 128
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 27.1 bits (57), Expect = 1.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 152 KLGVFTQPDGSAYLEQGNTKV*AAVYGP 235
++G+ ++ DGS+ +QG+ +V V GP
Sbjct: 3 RIGILSRSDGSSEWKQGSARVICGVNGP 30
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 26.2 bits (55), Expect = 2.1
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -2
Query: 234 GPYTAAQTLVFPCSKYALPSGCVKTPSLHLIRRNSLGLRPSKRNP 100
GP TA+ T P S P+ K+PSL + RP P
Sbjct: 271 GPLTASPT---PSSPTGTPNSMSKSPSLSSLASTGASYRPGPSKP 312
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 26.2 bits (55), Expect = 2.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 275 VVNCQYSMATFSTGERKNRPRGDRKSQEMSMH 370
+V CQ+S TFST + + KSQ +S H
Sbjct: 1999 LVTCQHSDNTFSTPACRFAANAELKSQTISNH 2030
>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 2.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -3
Query: 86 NLVQAYSTNNSCLYCGV 36
N+V T N+C YCGV
Sbjct: 131 NVVARIGTKNNCTYCGV 147
>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 291
Score = 25.4 bits (53), Expect = 3.6
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 98 QGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAV 226
+GLRLDGR+ ++ R + + G + G + G+T+V A +
Sbjct: 21 KGLRLDGRQLSDFRSLEIQFG---KEYGQVDVSFGHTRVMARI 60
>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 25.0 bits (52), Expect = 4.8
Identities = 23/99 (23%), Positives = 38/99 (38%)
Frame = +2
Query: 89 LSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTD 268
L +Q +R DGR +E R I + +GSA + G + +
Sbjct: 29 LLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIAEPFENSPNE 88
Query: 269 GVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQAL 385
G +V ++ + + K P D +Q +S L Q L
Sbjct: 89 GWIVP-NLELSPLCSSKFKPGPPSD-LAQVVSQELHQTL 125
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.0 bits (52), Expect = 4.8
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 353 GIYDHRVDDF-FFHQWKM*PYYIDSLQQHHQL 261
G+Y ++F + H W + YID+L HQ+
Sbjct: 1241 GLYQMIFENFAYVHPWLLRQQYIDTLYTIHQV 1272
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 24.2 bits (50), Expect = 8.4
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -2
Query: 309 ENVAILY*QFTTTPSVDIFDLDA*CGPYTAAQTLVFPCSK 190
E + I Y + PS+D + C PYT+ L C +
Sbjct: 272 EELVIRYFGTDSNPSIDASEFILSCLPYTSLDALNVVCGQ 311
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,844,078
Number of Sequences: 5004
Number of extensions: 37467
Number of successful extensions: 88
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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