Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_B21
(421 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0074 + 3905810-3905981,3906115-3906175,3906522-3906573,390... 65 2e-11
08_01_0115 - 929926-930012,930093-930242,930336-930424,930696-93... 59 2e-09
03_06_0648 + 35280492-35280645,35281742-35281820,35282491-352825... 59 2e-09
03_06_0727 - 35766252-35766481,35766592-35766721,35767049-357671... 46 2e-05
07_01_0488 - 3678329-3678577,3678769-3678810,3678891-3678944,367... 35 0.023
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479... 35 0.031
01_06_1640 + 38836977-38836988,38837694-38838047,38838164-388382... 29 1.1
11_03_0222 + 11880333-11880551,11880667-11880736,11880839-118809... 28 3.5
04_04_0699 - 27345243-27346199 28 3.5
02_01_0531 - 3856343-3856373,3856426-3856506,3857972-3858097,385... 27 4.6
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 27 8.1
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565... 27 8.1
>09_02_0074 +
3905810-3905981,3906115-3906175,3906522-3906573,
3906791-3906832,3906910-3906977,3907521-3907599,
3907685-3907721,3908048-3908164,3908247-3908332,
3908552-3908641,3909679-3909779,3909801-3909885
Length = 329
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/66 (42%), Positives = 45/66 (68%)
Frame = +2
Query: 224 VYGPHQASKSKMSTDGVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKT 403
+ G Q ++++ +V C+Y MA FSTG+R+ +P+GDR+S E+S+ +RQ + A+I T
Sbjct: 92 IEGEVQNKGQQVNSKDALVRCEYRMADFSTGDRRRKPKGDRRSTEISLVIRQTMEASILT 151
Query: 404 ELYPRS 421
L PRS
Sbjct: 152 HLMPRS 157
>08_01_0115 -
929926-930012,930093-930242,930336-930424,930696-930816,
930918-931020,931685-931763,933879-934038
Length = 262
Score = 58.8 bits (136), Expect = 2e-09
Identities = 35/105 (33%), Positives = 54/105 (51%)
Frame = +2
Query: 107 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVNC 286
R DGR ++ R + G T GSAY E G TKV +V+GP ++ K+ + +D +NC
Sbjct: 41 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 100
Query: 287 QYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTELYPRS 421
S TF+T R ++E S L +AL A+ +P++
Sbjct: 101 NVSYTTFATPIRGQ----GMDNKEYSAMLHKALEGAVMLHTFPKT 141
>03_06_0648 +
35280492-35280645,35281742-35281820,35282491-35282593,
35282695-35282815,35283144-35283232,35283324-35283473,
35285842-35287161
Length = 671
Score = 58.8 bits (136), Expect = 2e-09
Identities = 35/105 (33%), Positives = 54/105 (51%)
Frame = +2
Query: 107 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVNC 286
R DGR ++ R + G T GSAY E G TKV +V+GP ++ K+ + +D +NC
Sbjct: 39 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 98
Query: 287 QYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTELYPRS 421
S TF+T R ++E S L +AL A+ +P++
Sbjct: 99 NVSYTTFATPIRGQ----GTDNKEYSAMLHKALEGAVMLHTFPKT 139
>03_06_0727 -
35766252-35766481,35766592-35766721,35767049-35767116,
35767179-35767217,35767677-35767761,35768097-35768197,
35768292-35768511
Length = 290
Score = 45.6 bits (103), Expect = 2e-05
Identities = 24/73 (32%), Positives = 36/73 (49%)
Frame = +2
Query: 107 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVNC 286
R DGR PN+LR C + GSA QG+T V AAVYGP ++ + + +
Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEV 64
Query: 287 QYSMATFSTGERK 325
+ T G+++
Sbjct: 65 VWKPMTGQIGKQE 77
>07_01_0488 -
3678329-3678577,3678769-3678810,3678891-3678944,
3679149-3679212,3679316-3679410,3679477-3679584,
3679679-3679752,3680338-3680410,3680539-3680586,
3680694-3680877,3681262-3681440,3682167-3682259,
3682738-3682851,3683570-3683644,3683852-3684112,
3684821-3684934,3685473-3685529,3686668-3686863,
3686922-3686986,3687112-3687195,3688155-3688223,
3688545-3688844
Length = 865
Score = 35.1 bits (77), Expect = 0.023
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 101 GLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAV-YGPHQASK 250
G R DGR P ELR I + G+ + GSA +G T+ A V G +Q ++
Sbjct: 409 GKRSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQ 459
>02_04_0625 -
24547435-24547569,24547674-24547742,24547871-24547997,
24548086-24548209,24548714-24548832,24548953-24549044,
24549124-24549329,24549429-24549534,24549636-24549740,
24549836-24549942,24550030-24550253,24550341-24550468,
24550945-24551022,24551338-24552012,24552655-24552798,
24552985-24553064,24553958-24554029,24554124-24554343,
24554460-24554590,24555118-24555243,24555567-24555695,
24556156-24556318,24556408-24556545,24557198-24557317,
24557521-24557682,24557751-24557876,24558172-24558342,
24558435-24558590,24559061-24559408
Length = 1526
Score = 34.7 bits (76), Expect = 0.031
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +2
Query: 98 QGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV 214
+GLR+DGR+ +E+R + C+ + GSA +G+T+V
Sbjct: 370 KGLRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQV 408
>01_06_1640 +
38836977-38836988,38837694-38838047,38838164-38838294,
38838554-38838860,38839036-38839349,38839507-38839645
Length = 418
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -2
Query: 255 FDLDA*CGPYTAAQTLVFPCSKYALPSGCVKTPSLHLIRRNSLGLRPSKRN 103
FD+ C +T ++ V S+Y LPS C P + S G + RN
Sbjct: 29 FDIQLECNSFTGSKA-VQDHSRYTLPSQCTNAPDPPPLPGTSYGTHRTSRN 78
>11_03_0222 +
11880333-11880551,11880667-11880736,11880839-11880944,
11881490-11881556,11881597-11881692
Length = 185
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 98 QGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAV 226
+ +R D RRP E R L + GSA + G+T + A++
Sbjct: 37 ESVRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASI 79
>04_04_0699 - 27345243-27346199
Length = 318
Score = 27.9 bits (59), Expect = 3.5
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 245 SKSKMSTDGVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHL 373
S+S S+ S +T S+G K R RG+ + MSM L
Sbjct: 241 SESSFSSSSSCTTTTTSSSTSSSGSPKRRKRGEAAAASMSMPL 283
>02_01_0531 -
3856343-3856373,3856426-3856506,3857972-3858097,
3858196-3858326,3858832-3858855,3859429-3859482,
3859967-3860136,3860322-3860380,3861274-3861390,
3861481-3861611,3861720-3861770,3862305-3862481
Length = 383
Score = 27.5 bits (58), Expect = 4.6
Identities = 22/76 (28%), Positives = 38/76 (50%)
Frame = +2
Query: 152 KLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVNCQYSMATFSTGERKNR 331
K+ + PDG AYL Q AA+ H+ KS++ D ++ ++A ++G R
Sbjct: 40 KVHLSRDPDGEAYLTQTEMMAVAAI-TVHKHFKSQL--DPYMIG---ALAEIASGRRLFV 93
Query: 332 PRGDRKSQEMSMHLRQ 379
DRK++E+ + Q
Sbjct: 94 DNYDRKTKEIKAGIMQ 109
>04_04_1630 - 34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 227 YGPHQASKSKMSTDGVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLR 376
Y QA+ ++T ++C YS+AT + + RP R+++ +H++
Sbjct: 964 YAQFQATVKSLAT----LDCLYSLATLAKQNKYVRPNFVRENEASQIHIK 1009
>03_05_0845 -
28155065-28155374,28156201-28156342,28156375-28156505,
28156591-28156784,28156859-28156969,28157234-28157399,
28157501-28157668,28157766-28158787
Length = 747
Score = 26.6 bits (56), Expect = 8.1
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 86 LLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYL 193
L+ + G R DG N + R GVFT PDGS Y+
Sbjct: 171 LIWANGSRYDGVWENGVPR---GTGVFTWPDGSRYV 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,781,896
Number of Sequences: 37544
Number of extensions: 235432
Number of successful extensions: 493
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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