Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_B21
(421 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73422-8|CAA97771.3| 240|Caenorhabditis elegans Hypothetical pr... 119 1e-27
Z49909-6|CAA90109.1| 214|Caenorhabditis elegans Hypothetical pr... 43 8e-05
AY303579-1|AAP57301.1| 214|Caenorhabditis elegans cell death-re... 43 8e-05
AC006815-1|AAL32260.1| 241|Caenorhabditis elegans Arp2/3 comple... 37 0.007
AC092690-2|AAK73855.2| 745|Caenorhabditis elegans Hypothetical ... 35 0.027
Z80221-1|CAB02309.1| 690|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 27 5.5
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 27 5.5
AL034392-4|CAA22307.2| 203|Caenorhabditis elegans Hypothetical ... 26 9.5
>Z73422-8|CAA97771.3| 240|Caenorhabditis elegans Hypothetical
protein B0564.1a protein.
Length = 240
Score = 119 bits (286), Expect = 1e-27
Identities = 57/113 (50%), Positives = 73/113 (64%)
Frame = +2
Query: 83 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMS 262
+++S G R+DGRRP ++R I +LG+ +GS YLE GNTKV AVYGP++ SK
Sbjct: 2 NIISEHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRI 61
Query: 263 TDGVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTELYPRS 421
D + CQYS FS ERKNR RGDRKS E+S L +A + I TE +PRS
Sbjct: 62 EDKCAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRS 114
>Z49909-6|CAA90109.1| 214|Caenorhabditis elegans Hypothetical
protein C14A4.5 protein.
Length = 214
Score = 43.2 bits (97), Expect = 8e-05
Identities = 30/96 (31%), Positives = 44/96 (45%)
Frame = +2
Query: 134 LRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVNCQYSMATFST 313
LR +RC+L DGSA QG T + A+ GP SK S + + ++ Y
Sbjct: 5 LREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISY------- 57
Query: 314 GERKNRPRGDRKSQEMSMHLRQALTAAIKTELYPRS 421
R N GD K ++ + L+ AI EL+P +
Sbjct: 58 --RAN--CGDNKFNVLNNIIHSTLSNAINLELFPHT 89
>AY303579-1|AAP57301.1| 214|Caenorhabditis elegans cell
death-related nuclease 5 protein.
Length = 214
Score = 43.2 bits (97), Expect = 8e-05
Identities = 30/96 (31%), Positives = 44/96 (45%)
Frame = +2
Query: 134 LRRIRCKLGVFTQPDGSAYLEQGNTKV*AAVYGPHQASKSKMSTDGVVVNCQYSMATFST 313
LR +RC+L DGSA QG T + A+ GP SK S + + ++ Y
Sbjct: 5 LREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISY------- 57
Query: 314 GERKNRPRGDRKSQEMSMHLRQALTAAIKTELYPRS 421
R N GD K ++ + L+ AI EL+P +
Sbjct: 58 --RAN--CGDNKFNVLNNIIHSTLSNAINLELFPHT 89
>AC006815-1|AAL32260.1| 241|Caenorhabditis elegans Arp2/3 complex
component protein 4 protein.
Length = 241
Score = 36.7 bits (81), Expect = 0.007
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 119 RRPNELRRIRC-KLGVFTQPDGSAYLEQGNTKV*AAVYGP 235
+R N R C K GVF DGS Y E GNT+V A + GP
Sbjct: 31 KRANTAFRPLCVKCGVFGAQDGSGYAEFGNTRVLAQITGP 70
>AC092690-2|AAK73855.2| 745|Caenorhabditis elegans Hypothetical
protein BE0003N10.1 protein.
Length = 745
Score = 34.7 bits (76), Expect = 0.027
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +2
Query: 101 GLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKV*AAV 226
G+R DGRRP+E R I + ++ + G + ++G T+V + V
Sbjct: 332 GIRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTV 373
>Z80221-1|CAB02309.1| 690|Caenorhabditis elegans Hypothetical
protein ZC247.2 protein.
Length = 690
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 334 WTIFSFTSGKCSHTILTVYNNTIS 263
W F F KC +T + +N+T S
Sbjct: 403 WKYFKFIYSKCRYTFIQFFNSTFS 426
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 327 FFLSPVENVAILY*QFTTTPSVDI 256
F L+ + NV +LY Q T TP++DI
Sbjct: 264 FSLALINNVHVLYQQDTLTPNLDI 287
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 327 FFLSPVENVAILY*QFTTTPSVDI 256
F L+ + NV +LY Q T TP++DI
Sbjct: 264 FSLALINNVHVLYQQDTLTPNLDI 287
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 327 FFLSPVENVAILY*QFTTTPSVDI 256
F L+ + NV +LY Q T TP++DI
Sbjct: 264 FSLALINNVHVLYQQDTLTPNLDI 287
>AL034392-4|CAA22307.2| 203|Caenorhabditis elegans Hypothetical
protein Y40B1A.4 protein.
Length = 203
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 351 PKRCQCICVKRLQQPSR 401
PKRC C C LQQ +R
Sbjct: 82 PKRCACTCPNCLQQNNR 98
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,178,393
Number of Sequences: 27780
Number of extensions: 211544
Number of successful extensions: 389
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -