Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B20
         (222 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    40   3e-05
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    27   0.25 
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    25   1.0  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    23   4.1  
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    23   5.5  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    22   9.5  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 40.3 bits (90), Expect = 3e-05
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = +2

Query: 110 MALGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKV 220
           M   D+ +  GL +LN +L ++S++ GY PSQAD  V
Sbjct: 1   MGFSDLTSDAGLKQLNDFLLDKSFIEGYEPSQADAVV 37


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 27.5 bits (58), Expect = 0.25
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 118 QCHFSIRNLIYSSKPHGPATP 56
           Q H S+RN I SSKP   +TP
Sbjct: 17  QFHISVRNSIQSSKPLSNSTP 37


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 112 HFSIRNLIYSSKPHGPAT 59
           H  I +L+Y + PHGP +
Sbjct: 262 HHKIEDLVYHAYPHGPCS 279


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 137 ERF*RLPVPFFY*KFNLLKQTTRPGNPSCRIPAARGIHYSR 15
           +R+  L V  FY  +N L       NP+  +  ++GIH +R
Sbjct: 486 DRYGCLAVDSFYNIYNHLDPVAMRLNPTVDLSFSKGIHPTR 526


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 125 VKTAQGLNELNQYLAERSYVSGYTPSQ 205
           V T   LN+L + + ER Y     PS+
Sbjct: 3   VHTGNRLNKLRELMKERGYTLYVVPSE 29


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 90   IKFLIEKWHWE 122
            I FLI +W WE
Sbjct: 977  IHFLISEWRWE 987


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 916,869
Number of Sequences: 5004
Number of extensions: 15100
Number of successful extensions: 37
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 53
effective length of database: 2,097,266
effective search space used: 41945320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)