Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_B20
(222 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 38 0.001
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 36 0.004
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 36 0.006
04_03_0256 - 13564070-13564456,13564543-13565299,13565734-135665... 30 0.29
06_03_0267 + 18970578-18972464 26 3.6
01_06_0241 - 27813076-27813622,27813695-27814125 26 3.6
01_05_0293 - 20532559-20532572,20532573-20532798,20532926-205339... 26 3.6
04_02_0007 + 8464923-8465155,8466037-8466591,8466645-8467662,846... 25 6.2
10_08_0192 + 15625851-15626765 25 8.3
06_01_1060 + 8522131-8523606 25 8.3
03_05_0195 - 21822418-21822441,21822480-21822659,21823337-218234... 25 8.3
02_04_0572 + 23972319-23973683 25 8.3
02_04_0349 + 22222091-22222639,22222718-22223695 25 8.3
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 37.5 bits (83), Expect = 0.001
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 110 MALGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKV 220
+ L +V + GL +L++YL RSY+SGY S+ D+ V
Sbjct: 22 ITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTV 58
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 35.9 bits (79), Expect = 0.004
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +2
Query: 122 DVKTAQGLNELNQYLAERSYVSGYTPSQADIKV 220
D+ TA GL L Q+L+ ++YVSG S+ DIKV
Sbjct: 7 DLHTADGLKALEQHLSGKTYVSGNAISKDDIKV 39
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 35.5 bits (78), Expect = 0.006
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 122 DVKTAQGLNELNQYLAERSYVSGYTPSQADIKV 220
+V + GL +L++YL RSY+SGY S D+ V
Sbjct: 7 NVSSEAGLKKLDEYLLTRSYISGYQASNDDLAV 39
>04_03_0256 -
13564070-13564456,13564543-13565299,13565734-13566535,
13566884-13566917
Length = 659
Score = 29.9 bits (64), Expect = 0.29
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -2
Query: 95 FNLLKQTTRPGNPSCRI--PAARGIHYSR 15
F++ Q+T+PGNP RI P A+ I Y R
Sbjct: 251 FSIFVQSTQPGNPDGRIALPEAKSIQYIR 279
>06_03_0267 + 18970578-18972464
Length = 628
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 3 RWRRSRIVDPPGCRNSARGVAGPC 74
R ++I PGC ARG +G C
Sbjct: 242 RCNSTKICSQPGCAKGARGSSGRC 265
>01_06_0241 - 27813076-27813622,27813695-27814125
Length = 325
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +2
Query: 137 QGLNELNQYLAERSYVSGYTPSQAD 211
QG N +N+YL++ + ++ Y P + D
Sbjct: 216 QGNNSVNEYLSQFNKLARYAPEEVD 240
>01_05_0293 -
20532559-20532572,20532573-20532798,20532926-20533960,
20534670-20534996
Length = 533
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 97 NLIYSSKPHGPATPRAEFLQPG 32
+L+ SS P G TP FL PG
Sbjct: 287 SLLVSSYPFGTPTPLVSFLSPG 308
>04_02_0007 +
8464923-8465155,8466037-8466591,8466645-8467662,
8467768-8468485,8468651-8468937
Length = 936
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 10 GALE*WIPRAAGIRHEGLPGRVVCLSK 90
G+LE W+ +H G+P RV+CL +
Sbjct: 744 GSLERWLHSE---QHNGIPDRVLCLGQ 767
>10_08_0192 + 15625851-15626765
Length = 304
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 88 YSSKPHGPATPRAEFLQP 35
+S KPHG A+P E +P
Sbjct: 269 FSDKPHGCASPEPEATEP 286
>06_01_1060 + 8522131-8523606
Length = 491
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 59 PSCRIPAARGIHYSRAPP 6
P+CR+PAA + Y++ P
Sbjct: 96 PNCRVPAATFLEYAKQVP 113
>03_05_0195 -
21822418-21822441,21822480-21822659,21823337-21823453,
21824347-21824412,21825592-21825683,21825924-21825987,
21826098-21826176,21826248-21826387,21827253-21827334,
21827565-21827572,21828005-21828103,21828208-21828285,
21828379-21828472,21828726-21828823,21830299-21830502
Length = 474
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 193 VSRHITSFS*ILVQFI*PLSGFNVSQCHFSIRNLIYSSKPHG 68
V+R +TS + FI P+S + + CHFS+ S+P G
Sbjct: 154 VARFVTS----CMAFIGPVSSW--ANCHFSVHGDATDSRPEG 189
>02_04_0572 + 23972319-23973683
Length = 454
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +2
Query: 143 LNELNQYLAERSYVSGYTPSQ 205
L+EL+ + R+Y+SG+ PS+
Sbjct: 167 LSELSDLVLSRNYLSGHIPSE 187
>02_04_0349 + 22222091-22222639,22222718-22223695
Length = 508
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 1 RGGGALE*WIPRAAGIRHEGL 63
RG G L W P+ A +RHE +
Sbjct: 374 RGRGLLASWCPQEAVLRHEAV 394
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,640,643
Number of Sequences: 37544
Number of extensions: 117667
Number of successful extensions: 324
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 53
effective length of database: 12,803,516
effective search space used: 256070320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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