Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B20
         (222 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   2.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    20   3.1  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    20   4.1  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    20   4.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   4.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    19   5.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    19   5.5  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           19   5.5  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           19   5.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    19   7.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    19   7.2  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    19   7.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        19   9.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        19   9.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        19   9.5  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 20.6 bits (41), Expect = 2.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 170 ERSYVSGYTPSQ 205
           E SY++G TPS+
Sbjct: 285 ENSYLAGLTPSE 296


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
          beta-synthase protein.
          Length = 504

 Score = 20.2 bits (40), Expect = 3.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 55 RAEFLQPGGS 26
          + EFL PGGS
Sbjct: 67 KCEFLNPGGS 76



 Score = 19.8 bits (39), Expect = 4.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 89  LLKQTTRPGNP 57
           +L Q T PGNP
Sbjct: 178 ILDQYTNPGNP 188


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 19.8 bits (39), Expect = 4.1
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +1

Query: 25  WIPRAAGIRHEG 60
           W+P+   +RH+G
Sbjct: 132 WVPQKYRLRHKG 143


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 19.8 bits (39), Expect = 4.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 101 NRKMALGDVKTAQGLNELNQYLAERSYVSG 190
           NRK+    VKT + ++EL + +     + G
Sbjct: 271 NRKICEAFVKTGKKISELEKEMLNGQKLQG 300


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.8 bits (39), Expect = 4.1
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +1

Query: 25  WIPRAAGIRHEG 60
           W+P+   +RH+G
Sbjct: 132 WVPQKYRLRHKG 143


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 188 QTHNFFQLNIGSVHLALERF*RLPVPFFY*KFNLL 84
           Q HNF  +    +   ++R  R+  P  +  FN+L
Sbjct: 428 QLHNFTTMTPQEIAQWIDRRSRIVFPVAFIIFNIL 462


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 164 NIGSVHLALERF*RLPVPFFY 102
           NI + HL       + VPFFY
Sbjct: 363 NIVATHLVCGILGSILVPFFY 383


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -2

Query: 71  RPGNPSCRIPAARGIHYSRAPPP 3
           +P NP  + P  + + Y    PP
Sbjct: 63  KPYNPEHKPPGPKDLVYLEPSPP 85


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -2

Query: 71  RPGNPSCRIPAARGIHYSRAPPP 3
           +P NP  + P  + + Y    PP
Sbjct: 64  KPYNPEHKPPGPKDLVYLEPSPP 86


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.0 bits (37), Expect = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 137 QGLNELNQYLAERSYV 184
           +G+    QYLAE +YV
Sbjct: 742 RGIASGMQYLAEMNYV 757


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.0 bits (37), Expect = 7.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 98  SNRKMALGDVK 130
           +NRK  LGD+K
Sbjct: 379 ANRKPNLGDIK 389


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
          protein.
          Length = 190

 Score = 19.0 bits (37), Expect = 7.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 97 NLIYSSKPHGPATPRAEF 44
          NL+ +SK  G A   A+F
Sbjct: 39 NLLLASKAKGAAVKLADF 56


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 45  SCSPGDPL 22
           SC+PG PL
Sbjct: 533 SCAPGAPL 540


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 45  SCSPGDPL 22
           SC+PG PL
Sbjct: 533 SCAPGAPL 540


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 45  SCSPGDPL 22
           SC+PG PL
Sbjct: 533 SCAPGAPL 540


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,461
Number of Sequences: 438
Number of extensions: 1182
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3407265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)