Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B19
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   101   4e-23
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   101   4e-23
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual       23   8.6  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  101 bits (241), Expect = 4e-23
 Identities = 44/56 (78%), Positives = 50/56 (89%)
 Frame = +1

Query: 19  RPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSG 186
           RPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTHRSG
Sbjct: 33  RPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSG 88



 Score = 66.9 bits (156), Expect = 7e-13
 Identities = 27/47 (57%), Positives = 30/47 (63%)
 Frame = +2

Query: 185 GQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQXXXXXXXXXXXSGVP 325
           GQ AFGNMCR GRMFAPTK WR+WH +VN  +           SGVP
Sbjct: 88  GQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVP 134


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  101 bits (241), Expect = 4e-23
 Identities = 44/56 (78%), Positives = 50/56 (89%)
 Frame = +1

Query: 19  RPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSG 186
           RPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTHRSG
Sbjct: 33  RPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSG 88



 Score = 66.9 bits (156), Expect = 7e-13
 Identities = 27/47 (57%), Positives = 30/47 (63%)
 Frame = +2

Query: 185 GQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQXXXXXXXXXXXSGVP 325
           GQ AFGNMCR GRMFAPTK WR+WH +VN  +           SGVP
Sbjct: 88  GQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVP 134


>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 364

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 287 HVSAVGSRDGAS-ASTAWSARTYVRRGTCYRMHPAPDLW 174
           H   +G R G   ASTA       ++G  Y + P P+LW
Sbjct: 45  HSEMIGKRYGEQIASTA-------KQGFIYLLQPTPELW 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,202,841
Number of Sequences: 5004
Number of extensions: 19290
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)