Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_B19
(325 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 95 9e-21
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 94 2e-20
06_03_0089 - 16475677-16476309 33 0.039
10_02_0199 + 6668902-6669293,6669825-6669882 32 0.12
10_08_0797 + 20646091-20646519,20646531-20647460 29 0.84
02_04_0457 + 23093020-23093343,23093798-23093806 29 0.84
03_05_0366 - 23505755-23506441 29 1.1
01_06_1069 + 34275823-34276167 29 1.1
12_02_0488 + 19587337-19587648,19587739-19587798,19587876-195879... 27 2.6
05_07_0208 + 28412736-28415348 27 2.6
03_05_0994 + 29541109-29542527 27 2.6
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 27 2.6
12_02_0260 + 16531511-16531571,16531731-16532089 27 3.4
05_03_0579 - 15714195-15714887 27 3.4
01_06_0025 - 25716563-25718332 27 3.4
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 27 4.5
07_01_1064 + 9385330-9385432,9386181-9386236,9386938-9387082,938... 27 4.5
01_01_0077 - 585670-585787,585921-586687 27 4.5
11_06_0120 - 20324794-20325204,20325416-20325545,20326172-203262... 26 5.9
10_02_0183 + 6365523-6366245 26 5.9
02_04_0413 + 22681957-22682035,22682253-22682788 26 5.9
02_03_0313 - 17590109-17590148,17590254-17590382,17590479-175906... 26 5.9
02_01_0442 + 3196592-3196661,3198663-3198739,3199185-3199273,320... 26 5.9
12_02_0852 - 23690015-23690545 26 7.8
11_05_0004 - 18269416-18269473,18270319-18270509,18271061-182720... 26 7.8
10_02_0160 - 6033956-6034140,6034327-6034594,6035739-6036107,603... 26 7.8
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 95.5 bits (227), Expect = 9e-21
Identities = 43/58 (74%), Positives = 48/58 (82%)
Frame = +1
Query: 19 RPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGAG 192
RPD+V VH +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+G G
Sbjct: 37 RPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQG 94
Score = 72.1 bits (169), Expect = 9e-14
Identities = 29/47 (61%), Positives = 32/47 (68%)
Frame = +2
Query: 185 GQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQXXXXXXXXXXXSGVP 325
GQGAFGNMCRGGRMFAPTK WR+WHRRVN+ + VP
Sbjct: 92 GQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVP 138
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 94.3 bits (224), Expect = 2e-20
Identities = 42/58 (72%), Positives = 47/58 (81%)
Frame = +1
Query: 19 RPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGAG 192
RPD+V H +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+G G
Sbjct: 36 RPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQG 93
Score = 74.9 bits (176), Expect = 1e-14
Identities = 31/47 (65%), Positives = 33/47 (70%)
Frame = +2
Query: 185 GQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQXXXXXXXXXXXSGVP 325
GQGAFGNMCRGGRMFAPTK WRRWHRRVN+R + VP
Sbjct: 91 GQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVP 137
>06_03_0089 - 16475677-16476309
Length = 210
Score = 33.5 bits (73), Expect = 0.039
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = -3
Query: 311 LPRRRPRQHVSAVGSRDGASASTAWS---ARTYVRRGTCYRMHPAPDLWVPPPRTRGIRA 141
LPRRR + S G +GA+A+ A++ AR R + +P P P +R
Sbjct: 54 LPRRRGERRASPTGREEGATAAPAFTTGYARCRPPRPSICTRRNSPATPPPDPEEEEVRH 113
Query: 140 TARPVPQ 120
++RP Q
Sbjct: 114 SSRPAAQ 120
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 31.9 bits (69), Expect = 0.12
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 52 MSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 180
+++ A ++E G A+SW TGRA A + R R GG R
Sbjct: 18 LARAAASSVAANREGGG--GAQSWATGRAAAELGRGRKGGRRR 58
>10_08_0797 + 20646091-20646519,20646531-20647460
Length = 452
Score = 29.1 bits (62), Expect = 0.84
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -3
Query: 248 STAWSARTYVRRGTCYRMHPAPDLWVPPPRTRGIRATA 135
S WS VR +C H A P PR +RATA
Sbjct: 68 SRGWSVVVDVRDTSCRLSHLATGATAPLPRLNAVRATA 105
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 29.1 bits (62), Expect = 0.84
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +1
Query: 97 GHQTSAESWGTGRAVARIPRVRGGGTHRSGAG 192
G + S W G A A VRGGG RSG G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGG 106
>03_05_0366 - 23505755-23506441
Length = 228
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 73 PYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTH 177
P C S E + +AES TG A R R+ G T+
Sbjct: 134 PRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPTN 168
>01_06_1069 + 34275823-34276167
Length = 114
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +1
Query: 91 EAGHQTSAESWGTGRAVARIPRVRGGGTHRSGAG 192
E G + E G GR V R P V GG G G
Sbjct: 14 EGGSNSGGEGDGEGRRVRRRPMVHAGGGDGDGGG 47
>12_02_0488 +
19587337-19587648,19587739-19587798,19587876-19587941,
19588017-19588082,19588253-19588345
Length = 198
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 4 NSARGRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAES 120
N + + D N++ + SK R VSK H SAES
Sbjct: 79 NKRKVQMDTENELMTNRSKEVRTKMSVSKACKHSVSAES 117
>05_07_0208 + 28412736-28415348
Length = 870
Score = 27.5 bits (58), Expect = 2.6
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = -3
Query: 308 PRRRPRQHVSAVGS---RDGASASTAWSARTYVRRGTCYRMHPAPDLWV 171
PR+RPR SA R ASA +S R+ R C A LW+
Sbjct: 38 PRKRPRGVGSAAAPPPPRAAASAEATYSDRSAALRALCSHGQLAQALWL 86
>03_05_0994 + 29541109-29542527
Length = 472
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 218 RRGTCYRMHPAPDLWVPPPRTRGIRATAR 132
RRG + P + PPPR R RA AR
Sbjct: 246 RRGRSRKAAPEAAVAPPPPRARSTRAAAR 274
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 170 PPPRTRGIRATARPVPQDSA 111
PPPRTR + PVP SA
Sbjct: 166 PPPRTRQVNPAPPPVPSPSA 185
>12_02_0260 + 16531511-16531571,16531731-16532089
Length = 139
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 310 CHGVGHVSTSLP*VHATVPAPPRLGRR 230
C VGHV + P + +P P+L RR
Sbjct: 67 CCDVGHVVAAAPGFRSAIPVDPKLFRR 93
>05_03_0579 - 15714195-15714887
Length = 230
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 314 TLPRRRPRQHVSAVGSRDGASASTA 240
TLPR+ PRQ +SA G S+S A
Sbjct: 152 TLPRQHPRQVLSATGRPTVVSSSNA 176
>01_06_0025 - 25716563-25718332
Length = 589
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -3
Query: 293 RQHVSAVGSRDGASASTAWSARTYVRRGTCYRMHPAPDLWVPPPRTRGIRATARPVPQD 117
RQ V+ G DG T TY+++ + +P PPP T+ + + V Q+
Sbjct: 445 RQRVATRGQADGVRLYTTPHMDTYLKQAEQFEKNPDE---APPPATKHVPEPDQVVDQE 500
>10_08_0911 - 21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 231 ANIRPPRHMLPNAPCPR 181
A+ RP +H++PN P PR
Sbjct: 1829 ASTRPVKHLVPNVPRPR 1845
>07_01_1064 +
9385330-9385432,9386181-9386236,9386938-9387082,
9387126-9387298,9388058-9388129,9388222-9388336,
9388418-9388521,9388604-9388645,9388932-9389144,
9389621-9389689
Length = 363
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 22 PDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIP 153
PD++ + H+ + KN R +A +G G VA++P
Sbjct: 63 PDVIQNYHLCVVKNRRLDSDTIAKASQMKIIMQYGVGLEVAQLP 106
>01_01_0077 - 585670-585787,585921-586687
Length = 294
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 268 HATVPAPPRLGRREHTSAAA 209
H VP PP+LGRR + AA
Sbjct: 23 HPPVPPPPKLGRRAALAIAA 42
>11_06_0120 -
20324794-20325204,20325416-20325545,20326172-20326255,
20326584-20326823,20327418-20327498,20327761-20328113
Length = 432
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 124 PKTRRWFDDRPPC*RSRAGARSS 56
PK R+W + P C SR +RS+
Sbjct: 408 PKKRKWIERSPDCVASRLRSRSN 430
>10_02_0183 + 6365523-6366245
Length = 240
Score = 26.2 bits (55), Expect = 5.9
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = -3
Query: 203 YRMHPAPDLWVPPPRTRGIRATARPVPQDSALV 105
+R+HP L +P + ++ VP+D+++V
Sbjct: 190 FRLHPPTPLMLPHKASTSVKIAGYDVPKDASVV 222
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 26.2 bits (55), Expect = 5.9
Identities = 19/65 (29%), Positives = 26/65 (40%)
Frame = +1
Query: 1 LNSARGRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 180
+N AR P + ++V N AG S G G+A P+ + GG
Sbjct: 19 VNCARQEPHQNSRLYVRAEPNEGPTADPDAGAGGDHGTSS-GNGKASGHRPQAKFGGGCC 77
Query: 181 SGAGC 195
GAGC
Sbjct: 78 CGAGC 82
>02_03_0313 -
17590109-17590148,17590254-17590382,17590479-17590612,
17590779-17590841,17590920-17591070,17593372-17593424,
17593483-17593629,17593839-17594163,17594240-17594409,
17595252-17595453,17596065-17596273,17597051-17597260,
17597360-17597489,17599664-17600402,17600411-17600531
Length = 940
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 198 SVTCAAADVCSRRPSRGGAGTVA 266
S+TC A V SRR +R G G A
Sbjct: 176 SITCGANGVGSRRATRAGKGGAA 198
>02_01_0442 +
3196592-3196661,3198663-3198739,3199185-3199273,
3200101-3200220,3200970-3201086,3201290-3201433,
3201537-3201660,3201772-3201963,3202542-3202907
Length = 432
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 74 GWRAFFDIDTWTSLTRSGLPRAEF 3
GW AF D T TR+GLP F
Sbjct: 391 GWAAFSDDVVITHQTRAGLPEPTF 414
>12_02_0852 - 23690015-23690545
Length = 176
Score = 25.8 bits (54), Expect = 7.8
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -3
Query: 272 GSRDGASASTAWSARTYVRRGTCYRMHPAPDLWVPPPRTRGIRATAR 132
G RDGA+ + +W+ R+ R +PDL P RG R AR
Sbjct: 9 GDRDGAATARSWARRSRCRLSAA-PATASPDL--VSPLGRGDRRRAR 52
>11_05_0004 -
18269416-18269473,18270319-18270509,18271061-18272004,
18272083-18272254,18272332-18272407,18272498-18272617,
18272795-18272959,18273048-18273138,18273673-18273757,
18273873-18274043,18274151-18274207,18274290-18274385,
18275223-18275365,18275464-18275530
Length = 811
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 191 PAPDLWVPPPRTRGIRATARPVPQDSALV 105
P P +P PRT+ +R A +P DS+ +
Sbjct: 383 PPPVNPLPVPRTKRLRPNATALPADSSAI 411
>10_02_0160 -
6033956-6034140,6034327-6034594,6035739-6036107,
6036787-6037499,6038289-6038493,6038721-6038933
Length = 650
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 320 PRTLPRRRPRQHVSAV 273
P TLP RRPR H AV
Sbjct: 481 PSTLPPRRPRWHTFAV 496
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,013,123
Number of Sequences: 37544
Number of extensions: 228149
Number of successful extensions: 881
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -