Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_B19
(325 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 85 1e-17
Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical pr... 26 7.2
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 26 7.2
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 26 7.2
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 25 9.5
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 25 9.5
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 25 9.5
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 84.6 bits (200), Expect = 1e-17
Identities = 39/58 (67%), Positives = 46/58 (79%)
Frame = +1
Query: 19 RPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGAG 192
RPDLV+ + + +N RQ + V+ +AG Q SAESWGTGRAVARIPRVRGGGTHRSG G
Sbjct: 32 RPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHRSGQG 89
Score = 68.5 bits (160), Expect = 1e-12
Identities = 28/47 (59%), Positives = 31/47 (65%)
Frame = +2
Query: 185 GQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQXXXXXXXXXXXSGVP 325
GQGAFGNMCRGG MFAP K +RRWHR VN+ Q SG+P
Sbjct: 87 GQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIP 133
>Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical
protein DY3.5 protein.
Length = 796
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 170 PPPRTRG-IRATARPVPQDSALV**PA 93
P P TR RAT RP PQ+ A+ PA
Sbjct: 644 PSPTTRPPTRATIRPTPQNKAVTSRPA 670
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 320 PRTLPRRRPRQHVSAVGSRDGASASTAWSARTY 222
P LP RR R+H S RDG+ + W +++
Sbjct: 528 PNKLPVRR-RRHDSGSPDRDGSESPKMWRKKSH 559
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 320 PRTLPRRRPRQHVSAVGSRDGASASTAWSARTY 222
P LP RR R+H S RDG+ + W +++
Sbjct: 528 PNKLPVRR-RRHDSGSPDRDGSESPKMWRKKSH 559
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical protein
T10G3.5b protein.
Length = 1203
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 133 DRYPKTRRWFDDRPPC*RSRAGARSSTLIRGHH*R 29
DRY +R+W DD + G S +R HH R
Sbjct: 1134 DRY-SSRKWLDDAEAINCTECGKVFSLTVRKHHCR 1167
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical protein
T10G3.5a protein.
Length = 1205
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 133 DRYPKTRRWFDDRPPC*RSRAGARSSTLIRGHH*R 29
DRY +R+W DD + G S +R HH R
Sbjct: 1136 DRY-SSRKWLDDAEAINCTECGKVFSLTVRKHHCR 1169
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/93 (19%), Positives = 35/93 (37%)
Frame = +1
Query: 7 SARGRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSG 186
S + +D S S ++ P ++E+G T A S + + P GG+ S
Sbjct: 449 STESQSSTPSDASSSESASSSSPAATTEESGSSTDAVSSSPSGSSSESPNSSTGGSDSSS 508
Query: 187 AGCIR*HVPRRTYVRADQAVEALAPSREPTAET 285
+ + + + + E S EP+ +
Sbjct: 509 SESVTTEPSGSSTEPSGSSTEPSGSSTEPSGSS 541
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/93 (19%), Positives = 35/93 (37%)
Frame = +1
Query: 7 SARGRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSG 186
S + +D S S ++ P ++E+G T A S + + P GG+ S
Sbjct: 449 STESQSSTPSDASSSESASSSSPAATTEESGSSTDAVSSSPSGSSSESPNSSTGGSDSSS 508
Query: 187 AGCIR*HVPRRTYVRADQAVEALAPSREPTAET 285
+ + + + + E S EP+ +
Sbjct: 509 SESVTTEPSGSSTEPSGSSTEPSGSSTEPSGSS 541
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/93 (19%), Positives = 35/93 (37%)
Frame = +1
Query: 7 SARGRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSG 186
S + +D S S ++ P ++E+G T A S + + P GG+ S
Sbjct: 449 STESQSSTPSDASSSESASSSSPAATTEESGSSTDAVSSSPSGSSSESPNSSTGGSDSSS 508
Query: 187 AGCIR*HVPRRTYVRADQAVEALAPSREPTAET 285
+ + + + + E S EP+ +
Sbjct: 509 SESVTTEPSGSSTEPSGSSTEPSGSSTEPSGSS 541
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/93 (19%), Positives = 35/93 (37%)
Frame = +1
Query: 7 SARGRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSG 186
S + +D S S ++ P ++E+G T A S + + P GG+ S
Sbjct: 449 STESQSSTPSDASSSESASSSSPAATTEESGSSTDAVSSSPSGSSSESPNSSTGGSDSSS 508
Query: 187 AGCIR*HVPRRTYVRADQAVEALAPSREPTAET 285
+ + + + + E S EP+ +
Sbjct: 509 SESVTTEPSGSSTEPSGSSTEPSGSSTEPSGSS 541
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 133 DRYPKTRRWFDDRPPC*RSRAGARSSTLIRGHH*R 29
DRY +R+W DD + G S +R HH R
Sbjct: 1136 DRY-SSRKWLDDAEAINCTECGKVFSLTVRKHHCR 1169
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,113,799
Number of Sequences: 27780
Number of extensions: 131510
Number of successful extensions: 365
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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