Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B18
         (331 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.24 
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    26   1.3  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    26   1.7  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    25   2.2  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    25   3.0  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    25   3.9  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    25   3.9  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    24   5.2  
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    24   6.8  
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    24   6.8  
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||...    24   6.8  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    23   9.0  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    23   9.0  

>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 28.7 bits (61), Expect = 0.24
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 47  TSSVPES*CTQTTSASRCYTARGQTTGSCRSSTFRSVTTA 166
           TSS+  S  T TTS+S    +   TT    S+T++++TT+
Sbjct: 359 TSSLSSSVFTNTTSSSNSTNSSIPTTYPSNSTTYQNITTS 398


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 149 RSVTTALTSVRCQLGQARCRGSCTCILQCRRPLYW 253
           +S      + +C+LG+    G   C+ + RR ++W
Sbjct: 782 QSAVYGYAAAQCKLGECYEHGLLGCLAEPRRSIFW 816


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 190 GSGTLSRLVHLHIAVPEAFILGADEHHVDVG 282
           GSG + ++V  + A P   +LG D H  + G
Sbjct: 169 GSGIIHQIVLENYAAPGGMMLGTDSHTPNAG 199


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 190 GSGTLSRLVHLHIAVPEAFILGADEHHVDVGSTINLVCI 306
           GSG + ++V  + A P   ++G D H  + G  + +V I
Sbjct: 165 GSGIIHQIVLENYAFPGGLLIGTDSHTPNAGG-LGMVAI 202


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +1

Query: 145 VQKRDNGTYECQVSTGSGTLSRL 213
           ++++DNGTY+  +S+G G +S L
Sbjct: 32  IKRKDNGTYDFSMSSG-GLVSAL 53


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 143 YLICKIQSSDPSLCS-TWKRSSFVYIR 66
           YL CK+Q+ +PSL + T   ++F Y R
Sbjct: 388 YLYCKLQTQNPSLANDTHIFNTFFYNR 414


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 25  WVRRRDWHIISSGVLMY 75
           W++  DW ++ S VL Y
Sbjct: 595 WIKNSDWKMLGSRVLQY 611


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +2

Query: 47  TSSVPES*CTQTTSASRCYTARGQTTGSCRSSTFRSVTTALTSVRCQLGQAR 202
           +SS+  S    TTSA+   ++   T  S    T  + TTA TS       A+
Sbjct: 224 SSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQ 275



 Score = 23.4 bits (48), Expect = 9.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 329  GGTGLFSMMQTRLMVDPTSTWCSSAPSIKASGTA 228
            GG+G  S   T   ++ TS W SS  +I ++ TA
Sbjct: 909  GGSGYPSYSNTTQGMNTTSIWNSSNSTIVSNVTA 942


>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -3

Query: 302 QTRLMVDP-TSTWCSSAPS 249
           Q  L V P T+TWCS +PS
Sbjct: 9   QLPLNVRPYTTTWCSQSPS 27


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 266 CSSAPSIKASGTAICRCTSRDSVPDPVD 183
           CS+A S  A+GT   R + +   P+ VD
Sbjct: 11  CSTALSAAAAGTFFFRRSQKQPEPETVD 38


>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +2

Query: 122 TGSCRSSTFRSVTTALTSVRCQLGQARCRGSCTCI----LQCRRPLYWAPTNTMWTS 280
           TGS     F SV + + + R +LG+   +     I    L  RRP++ + T+  WTS
Sbjct: 160 TGSNVEECFLSVVSTIIT-RIELGEIDPQDQSLGIQYGDLSFRRPVHPSSTSNWWTS 215


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +3

Query: 6   RRERGIMGAPQRLAHHQFRSPNVHKRRALPGATQRGVRRLDLAD 137
           +   G+    Q L+H  +  P VHK   L   T R +   D +D
Sbjct: 275 KEHNGVFVEQQALSHMIYSHPIVHKHVGL--VTLRSINAYDSSD 316


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 196 GTLSRLVHLHIAVPEAFIL 252
           GT+S  +HL  AV E FIL
Sbjct: 246 GTISAELHLFDAVEEVFIL 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,431,753
Number of Sequences: 5004
Number of extensions: 27121
Number of successful extensions: 70
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)