Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_B18
(331 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0674 - 21745321-21746223,21746229-21747608 30 0.51
02_04_0240 - 21194597-21194743,21195579-21195680,21195797-211958... 30 0.51
04_03_0913 + 20777859-20780309 29 0.89
12_01_0440 - 3478361-3479152,3479163-3479681 29 1.2
11_06_0120 - 20324794-20325204,20325416-20325545,20326172-203262... 29 1.2
10_08_0699 - 19965728-19966006,19966693-19966908 29 1.2
04_04_0648 - 26936123-26936447,26936540-26936841,26937043-269379... 29 1.2
01_06_0523 - 30009191-30010531 29 1.2
07_03_0987 - 23155134-23155693,23155781-23157023 28 2.0
04_04_0508 + 25746949-25747117,25748561-25748826,25748934-25749335 27 3.6
02_05_0166 + 26412217-26413403,26413918-26414800 27 3.6
11_05_0058 + 18719852-18719929,18720032-18720889,18720969-187211... 27 4.7
11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142 27 4.7
08_01_0992 + 10045182-10045917,10046225-10046685 26 6.2
05_01_0170 + 1180168-1180367,1181538-1181598,1181657-1181659,118... 26 6.2
02_04_0518 + 23601355-23602498,23603481-23603779 26 6.2
12_01_0387 - 3028922-3029689,3032116-3032832 26 8.3
10_07_0012 - 11791524-11791957,11792014-11792108,11792163-117922... 26 8.3
06_01_0030 - 296681-296789,296903-297105,297348-297426,297512-29... 26 8.3
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 29.9 bits (64), Expect = 0.51
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 29 CAAETGTSS--VPES*CTQTTSASRCYTARGQTTGSCRSSTFRSVTT 163
CA + TS+ +P + CT +AS C + TG+C+ ST S T
Sbjct: 673 CAGQFSTSTYGIPTTTCTSKLTASSCKVS--SPTGACKFSTSTSTFT 717
>02_04_0240 -
21194597-21194743,21195579-21195680,21195797-21195875,
21195921-21196043,21196135-21196193,21196453-21196974,
21197434-21198177,21198426-21198506
Length = 618
Score = 29.9 bits (64), Expect = 0.51
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 89 ASRCYTARGQTTGSCRSSTFRSVTTALTSVRCQLGQ 196
A R T+ + SCRSST+++ TS R LGQ
Sbjct: 337 AERAVTSSRSSMTSCRSSTYQNGDRVATSSRSALGQ 372
>04_03_0913 + 20777859-20780309
Length = 816
Score = 29.1 bits (62), Expect = 0.89
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 81 RRALPGATQRGVRRLDLADQVRSEA*QRHLRVSGVNWVRHAVAARAPAYCSAGG 242
R +L +T V+RLD A Q+ Q VS + ++H + +C GG
Sbjct: 519 RGSLSDSTTIAVKRLDHACQIPQGDKQFRAEVSSIGTIQHINLVKLIGFCCEGG 572
>12_01_0440 - 3478361-3479152,3479163-3479681
Length = 436
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 270 CGRRVHHQPRLHHREESGAA 329
CG RV +LHH E GAA
Sbjct: 394 CGARVRETSQLHHHREGGAA 413
>11_06_0120 -
20324794-20325204,20325416-20325545,20326172-20326255,
20326584-20326823,20327418-20327498,20327761-20328113
Length = 432
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Frame = +2
Query: 83 TSASRCYTARGQTTGSCRSSTF-RSVTTALTSVR--CQLGQARCRGSCTCILQCRRPLYW 253
TS +C +GQ G C + +V A + C + CRG C C + CR W
Sbjct: 233 TSCCKCQIVQGQFCGDCLYMRYGENVLEAKKNPDWICPV----CRGICNCSI-CRTKKGW 287
Query: 254 APTNTMW 274
PT +
Sbjct: 288 FPTGAAY 294
>10_08_0699 - 19965728-19966006,19966693-19966908
Length = 164
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 42 LAHHQFRSPNVHKRRALPGATQRGVRRLDLADQ 140
+AHH F +P +R A A +RG R LD DQ
Sbjct: 1 MAHHHFFAPRKQRRSA---AQERGKRELDGMDQ 30
>04_04_0648 -
26936123-26936447,26936540-26936841,26937043-26937915,
26937995-26938108,26938285-26938612,26938719-26938843,
26938926-26938991,26939099-26939166,26939262-26939343,
26939433-26939546,26939647-26939747,26940429-26940678
Length = 915
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +1
Query: 58 SGVLMYTNDERFQVLHSEGSDDWILQIKYVQKRDNGTYECQVSTGSGTLS 207
SG+L + + +E SDD +++ ++ + G EC S+ G+ S
Sbjct: 486 SGMLPTNRSDHLSQISNEDSDDICKEVRCIETNETGGNECLESSAVGSNS 535
>01_06_0523 - 30009191-30010531
Length = 446
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 77 QTTSASRCYTARGQTTGSCRSSTFRSV 157
Q + RCY RGQ RSST+R V
Sbjct: 113 QCSPCRRCYAQRGQVFDPRRSSTYRRV 139
>07_03_0987 - 23155134-23155693,23155781-23157023
Length = 600
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 144 RSEA*QRHLRVSGVNWVRHAVAARAPAYCSAGG 242
RS+A RH+R++G RH V+ R YC++ G
Sbjct: 362 RSKAFDRHMRLAGRLRHRHVVSLR--GYCNSNG 392
>04_04_0508 + 25746949-25747117,25748561-25748826,25748934-25749335
Length = 278
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/72 (23%), Positives = 31/72 (43%)
Frame = +1
Query: 52 ISSGVLMYTNDERFQVLHSEGSDDWILQIKYVQKRDNGTYECQVSTGSGTLSRLVHLHIA 231
+ SG +M+ + R HS +DW+L + + + +G + S S + A
Sbjct: 126 VKSGWVMH--EFRLDSPHSPPKEDWVLCRVFQKSKGDGEQDNPTSAASPAATFAGSSQAA 183
Query: 232 VPEAFILGADEH 267
VP +D+H
Sbjct: 184 VPGQAAYSSDDH 195
>02_05_0166 + 26412217-26413403,26413918-26414800
Length = 689
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +2
Query: 74 TQTTSASRCYTARGQTTGSCRSSTFRSVTTALTSVRCQLGQARCRGS 214
+ +T A + RG++T +CRS S + C+ + RG+
Sbjct: 187 SDSTGAVAATSIRGRSTSTCRSGVLTSESILTVEKTCESAKDSTRGN 233
>11_05_0058 +
18719852-18719929,18720032-18720889,18720969-18721118,
18722248-18722496,18722531-18722575,18722576-18722638
Length = 480
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 25 WVRRRDWHIISSGVLMYTNDERFQVLHSEGS 117
W+R + HI + + Y RF+++ EGS
Sbjct: 243 WIRALEIHIQNLVIFNYHGSVRFRIIQGEGS 273
>11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142
Length = 751
Score = 26.6 bits (56), Expect = 4.7
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Frame = +3
Query: 123 LDLADQVRSEA*QRHLRVSGVNW------VRHAVAARAPAYCSAGGLYTGRRRTPCGRRV 284
L +A++V S +VS V+W V+H + +AGG T RR GR
Sbjct: 570 LHVANEVASPLQAAAAKVSDVHWCRRSNEVKHGFSQLVAGSATAGGPSTATRRGWEGRSR 629
Query: 285 HHQPRLHH 308
+P L H
Sbjct: 630 QTRPDLPH 637
>08_01_0992 + 10045182-10045917,10046225-10046685
Length = 398
Score = 26.2 bits (55), Expect = 6.2
Identities = 22/66 (33%), Positives = 30/66 (45%)
Frame = +3
Query: 81 RRALPGATQRGVRRLDLADQVRSEA*QRHLRVSGVNWVRHAVAARAPAYCSAGGLYTGRR 260
R A+P + + +RRL++ + R A R L VR A A AY + G GRR
Sbjct: 212 RHAVPASWWKSMRRLNIGPERRLAAAHRVLHGFVGRAVRDPEAVPAGAYGAEDG---GRR 268
Query: 261 RTPCGR 278
R R
Sbjct: 269 RRDAER 274
>05_01_0170 +
1180168-1180367,1181538-1181598,1181657-1181659,
1182396-1182443,1182979-1184595
Length = 642
Score = 26.2 bits (55), Expect = 6.2
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +3
Query: 108 RGVRRLDLAD--QVRSEA*QRHLRVSGVNWVRHAVAARAPAYCSAGGLYTGRRRT 266
R +LD A V EA R LRV W + A AA A GG+ RT
Sbjct: 537 RASEQLDAAQAASVEMEAELRRLRVQSDQWRKAAEAAAAALGGGGGGIGRNVERT 591
>02_04_0518 + 23601355-23602498,23603481-23603779
Length = 480
Score = 26.2 bits (55), Expect = 6.2
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Frame = +3
Query: 60 RSPNVHKRRALPGATQRGVRRL---DLADQVRSEA*QRHLRVSGVNWVRHAVAARAPAYC 230
R+P + R A + RRL L+ V + A G HAVA RA C
Sbjct: 85 RNPALRSRLAATAESDAAHRRLFVHGLSPGVTAAAMAAAFAPFGALDECHAVADRATGRC 144
Query: 231 SAGGLYTGRRRTPCGR 278
G T RRR+ R
Sbjct: 145 RGYGFVTFRRRSAARR 160
>12_01_0387 - 3028922-3029689,3032116-3032832
Length = 494
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 324 HRTLLDDADEVDGGPDVHMVFVGAQY 247
H + DD D+V GG + +F AQY
Sbjct: 390 HPHVNDDDDDVPGGAGGYSLFTAAQY 415
>10_07_0012 -
11791524-11791957,11792014-11792108,11792163-11792226,
11792327-11792591,11792670-11793127,11793271-11793592
Length = 545
Score = 25.8 bits (54), Expect = 8.3
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = +1
Query: 79 NDERFQVLHSEGSD--DWI-LQIKYVQKRDNGTYECQVSTGSGTLSRLVHL 222
N R+ VL E S+ DW LQ K + G YEC+ T HL
Sbjct: 305 NTNRWIVLDMEHSEKHDWCQLQFKVLADVQKGRYECECKQWEHTGLLCTHL 355
>06_01_0030 -
296681-296789,296903-297105,297348-297426,297512-297877,
298590-298956,299235-299373,299461-299731,299849-299958,
300567-300704
Length = 593
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +1
Query: 64 VLMYTNDERFQVLHSEGSDDWILQIKYVQKRDN--GTY 171
++ ND + Q H +G W++ + Y + +N GTY
Sbjct: 441 IVFQNNDTKVQTYHIDGYAFWVVGMDYGEWTENSRGTY 478
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,773,798
Number of Sequences: 37544
Number of extensions: 232415
Number of successful extensions: 762
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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