Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B17
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    30   0.100
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    27   0.93 
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    24   6.5  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    23   8.6  
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    23   8.6  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    23   8.6  

>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 29.9 bits (64), Expect = 0.100
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 323 GTWDRRVMARPDQS*PTYRTGPTQLPRIQTGYLSLESV 210
           GTWDR+ +  P    P+    P+ +PR Q G  S+E++
Sbjct: 508 GTWDRQSLPPPQ---PSISRRPSVIPRPQEGSKSMEAI 542


>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 116 WFASKDFTMVDMALANTLKLTIVL 45
           W  S + T VD++LAN + L  VL
Sbjct: 217 WLRSTNITKVDLSLANVISLVDVL 240


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 194 KCNELT-PTQVKDIPSVSWEAASDQFYTLAMTDPDAPSRADPK 319
           K NE+  PT  +D  +     +SDQ++     DP+A + A  +
Sbjct: 369 KKNEVNAPTYARDHFASQKSISSDQYFGRGSFDPEAAAEAQER 411


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 191 TKCNELTPTQVKDIPSVSWEAASDQFYTLAMTDPDAPS 304
           TK  +  P  ++ I +V W+   D        DP AP+
Sbjct: 53  TKVKDNAPENLQTIIAVLWDKLEDLQKETLFDDPAAPT 90


>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = +2

Query: 212 PTQVKDIPSVS 244
           P+QVKD+PS+S
Sbjct: 192 PSQVKDLPSIS 202


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 167 NTRRGLK*TKCN--ELTPTQVKDIPSVSWEAASDQFYTLAMTDP 292
           N R+ +K T  +   L   ++   PS+   A S  F+ LA+ DP
Sbjct: 355 NRRKCIKLTSLDTYSLLVLEIMKHPSLLISAISQHFWVLALRDP 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,388,277
Number of Sequences: 5004
Number of extensions: 25636
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)