Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_B17
(325 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0831 + 6493897-6494100,6494195-6494256,6498047-6498087,649... 41 3e-04
12_01_0791 + 7234021-7234221,7234801-7234862,7235441-7235481,723... 39 0.001
06_01_0411 + 2939148-2939354,2939517-2939578,2939712-2939752,294... 38 0.002
11_03_0139 + 10632020-10632211,10632876-10632937,10633141-106331... 37 0.003
11_01_0326 - 2435918-2436135,2436232-2436272,2436486-2436547,243... 36 0.007
04_03_0855 - 20328695-20328912,20329128-20329168,20329782-203298... 36 0.007
06_01_0409 + 2926072-2926275,2926423-2926484,2926598-2926638,292... 36 0.010
06_03_0155 - 17321982-17322214,17323550-17323590,17323831-173238... 35 0.013
12_01_0332 - 2564541-2564758,2564847-2564887,2565138-2565199,256... 34 0.022
02_04_0085 - 19587026-19587243,19587509-19587549,19587811-195878... 34 0.022
09_04_0714 - 19685374-19685430,19685606-19685669,19686117-196862... 32 0.090
05_06_0093 - 25468271-25468320,25468393-25468433,25468592-254686... 32 0.12
01_06_0704 + 31336622-31336825,31336948-31337009,31337040-313371... 30 0.36
06_03_0423 - 20624149-20624375,20625581-20625621,20625709-206257... 30 0.48
02_02_0177 + 7484526-7484723,7484913-7484974,7485606-7485646,748... 29 0.63
04_03_0121 + 11506644-11508107 27 2.6
06_01_0416 + 2965761-2965809,2965995-2966172,2966256-2966327,296... 27 4.5
12_02_0741 - 22690452-22690528,22690693-22690813,22690871-226909... 26 5.9
02_05_1359 + 35915507-35915905,35915999-35916188,35916298-35917133 26 7.8
>01_01_0831 +
6493897-6494100,6494195-6494256,6498047-6498087,
6498218-6498441
Length = 176
Score = 40.7 bits (91), Expect = 3e-04
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 203 ELTPTQVKDIPSVSWEAASDQ-FYTLAMTDPDAPSRADPKFR 325
EL P+ V D P V+ + FYTL M DPDAPS +DP R
Sbjct: 43 ELRPSAVADQPRVAVGGPDMRTFYTLVMVDPDAPSPSDPNLR 84
>12_01_0791 +
7234021-7234221,7234801-7234862,7235441-7235481,
7235711-7235940
Length = 177
Score = 38.7 bits (86), Expect = 0.001
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 191 TKCNELTPTQVKDIPSVSWEAASD--QFYTLAMTDPDAPSRADPKFR 325
T +EL P+QV P+V D YTL M DPDAPS ++P R
Sbjct: 37 TSGSELRPSQVAGEPAVQITGGRDGRALYTLVMVDPDAPSPSNPSKR 83
>06_01_0411 +
2939148-2939354,2939517-2939578,2939712-2939752,
2941060-2941289
Length = 179
Score = 37.9 bits (84), Expect = 0.002
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 203 ELTPTQVKDIPSVSWEAASDQ--FYTLAMTDPDAPSRADPKFR 325
EL P+ V P V +D FYTL M DPDAPS +DP R
Sbjct: 44 ELKPSMVTHQPRVE-VGGNDMRTFYTLVMVDPDAPSPSDPNLR 85
>11_03_0139 +
10632020-10632211,10632876-10632937,10633141-10633181,
10633667-10633883,10634229-10634271
Length = 184
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 191 TKCNELTPTQVKDIPSVSWEAASDQ-FYTLAMTDPDAPSRADPKFR 325
T +EL P+QV + P + E + YTL M DPDAPS ++P R
Sbjct: 35 TNGSELKPSQVLNQPRIYIEGRDMRTLYTLVMVDPDAPSPSNPTKR 80
>11_01_0326 -
2435918-2436135,2436232-2436272,2436486-2436547,
2436620-2436820
Length = 173
Score = 35.9 bits (79), Expect = 0.007
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 200 NELTPTQVKDIPSVSWEAAS-DQFYTLAMTDPDAPSRADPKFR 325
+EL P+ V P V + F+TL MTDPD P +DP R
Sbjct: 41 HELYPSAVVSKPRVEVQGGDLRSFFTLVMTDPDVPGPSDPYLR 83
>04_03_0855 -
20328695-20328912,20329128-20329168,20329782-20329843,
20330023-20330223
Length = 173
Score = 35.9 bits (79), Expect = 0.007
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 200 NELTPTQVKDIPSVSWEAAS-DQFYTLAMTDPDAPSRADPKFR 325
+EL P+ V P V + F+TL MTDPD P +DP R
Sbjct: 41 HELFPSAVVSKPRVEVQGGDLRSFFTLVMTDPDVPGPSDPYLR 83
>06_01_0409 +
2926072-2926275,2926423-2926484,2926598-2926638,
2927165-2927394
Length = 178
Score = 35.5 bits (78), Expect = 0.010
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 203 ELTPTQVKDIPSVSWEAASDQ--FYTLAMTDPDAPSRADPKFR 325
EL P+ V P V +D FYTL M DPDAPS ++P R
Sbjct: 43 ELKPSMVTQQPRVV-VGGNDMRTFYTLVMVDPDAPSPSNPNLR 84
>06_03_0155 -
17321982-17322214,17323550-17323590,17323831-17323892,
17324051-17324245
Length = 176
Score = 35.1 bits (77), Expect = 0.013
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 203 ELTPTQVKDIPSVSWEAASDQFYTLAMTDPDAPSRADPKFR 325
E+ P+ P+V ++ + L MTDPDAPS ++P R
Sbjct: 41 EIKPSVAAAPPAVQIAGRVNELFALVMTDPDAPSPSEPTMR 81
>12_01_0332 -
2564541-2564758,2564847-2564887,2565138-2565199,
2565305-2565505
Length = 173
Score = 34.3 bits (75), Expect = 0.022
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 200 NELTPTQVKDIPSVSWEAASDQ-FYTLAMTDPDAPSRADPKFR 325
+E P+ V P V + + F+TL MTDPD P +DP R
Sbjct: 41 HEFYPSAVVSKPRVEVQGGDMRSFFTLVMTDPDVPGPSDPYLR 83
>02_04_0085 -
19587026-19587243,19587509-19587549,19587811-19587872,
19587990-19588190
Length = 173
Score = 34.3 bits (75), Expect = 0.022
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 200 NELTPTQVKDIPSVSWEAAS-DQFYTLAMTDPDAPSRADPKFR 325
+E P+ V P V + F+TL MTDPD P +DP R
Sbjct: 41 HEFFPSAVAGKPRVEVQGGDLRSFFTLVMTDPDVPGPSDPYLR 83
>09_04_0714 -
19685374-19685430,19685606-19685669,19686117-19686256,
19687916-19687969,19688407-19688451,19689480-19689517,
19689713-19689831,19689955-19690016,19691038-19691157
Length = 232
Score = 32.3 bits (70), Expect = 0.090
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 263 QFYTLAMTDPDAPSRADPKFR 325
+ YTL M DPDAPS + P++R
Sbjct: 36 KLYTLVMVDPDAPSPSKPEYR 56
>05_06_0093 -
25468271-25468320,25468393-25468433,25468592-25468653,
25468872-25469057
Length = 112
Score = 31.9 bits (69), Expect = 0.12
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 269 YTLAMTDPDAPSRADPKFR 325
YTL + DPDAPS +DP R
Sbjct: 60 YTLVLVDPDAPSPSDPSLR 78
>01_06_0704 +
31336622-31336825,31336948-31337009,31337040-31337171,
31337304-31337341,31337825-31337872,31338545-31338780
Length = 239
Score = 30.3 bits (65), Expect = 0.36
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 266 FYTLAMTDPDAPSRADP 316
FYTL + DPDAPS ++P
Sbjct: 65 FYTLVLVDPDAPSPSNP 81
>06_03_0423 -
20624149-20624375,20625581-20625621,20625709-20625770,
20626147-20626338
Length = 173
Score = 29.9 bits (64), Expect = 0.48
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +2
Query: 248 EAASDQF---YTLAMTDPDAPSRADPKFR 325
E D F YTL M DPDAP+ ++P R
Sbjct: 52 EIGGDDFRFAYTLVMVDPDAPNPSNPTLR 80
>02_02_0177 +
7484526-7484723,7484913-7484974,7485606-7485646,
7485845-7486101
Length = 185
Score = 29.5 bits (63), Expect = 0.63
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 269 YTLAMTDPDAPSRADPKFR 325
YTL M DPDAP+ ++P R
Sbjct: 64 YTLVMVDPDAPNPSNPTLR 82
>04_03_0121 + 11506644-11508107
Length = 487
Score = 27.5 bits (58), Expect = 2.6
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 200 NELTPTQVKDIPSVSWEAASDQFYTLAMTDPD 295
N + + +P + W A DQ+Y M D +
Sbjct: 375 NSVLESMTHGVPIIGWPLAGDQYYNAKMLDEE 406
>06_01_0416 +
2965761-2965809,2965995-2966172,2966256-2966327,
2966849-2967137,2967941-2968081,2969011-2969115,
2969354-2969501,2970023-2970075,2970189-2970266,
2970361-2970480,2970779-2970943,2971663-2971797,
2972063-2972182
Length = 550
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 108 LEGFHDGRHGSRKHPKIDH 52
L G H+ RH RKHP + H
Sbjct: 253 LSGAHEVRHCVRKHPDLGH 271
>12_02_0741 -
22690452-22690528,22690693-22690813,22690871-22690951,
22691048-22691096,22691324-22691409,22691494-22691571,
22691647-22691796,22691884-22691922,22692194-22692283,
22692568-22692630,22692722-22692791,22693109-22693155,
22693268-22693330,22693411-22693461,22693702-22693785,
22693932-22693996,22694322-22694378,22694452-22694569,
22694664-22694714,22694789-22694875,22694956-22695035,
22695962-22696127
Length = 590
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 233 PSVSWEAASDQFYTLAMTDPDAPSRA 310
PS+ W AASD A + PDA ++A
Sbjct: 347 PSIQWIAASDLEDATATSAPDAHAKA 372
>02_05_1359 + 35915507-35915905,35915999-35916188,35916298-35917133
Length = 474
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 179 GLK*TKCNELTPTQVKDIPSVSWEAASDQFYTLAMTDPDAPSRADP 316
GLK T +++ P + D+PSV A + + M DA S P
Sbjct: 144 GLKATASSDVAPVPIDDVPSVVPAANAPVRSSPVMPAADAASAPGP 189
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,595,894
Number of Sequences: 37544
Number of extensions: 195891
Number of successful extensions: 445
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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