Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B17
         (325 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016423-4|AAX88829.1|  185|Caenorhabditis elegans Hypothetical ...    61   2e-10
AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical ...    61   2e-10
AF038611-5|AAT27250.1|  760|Caenorhabditis elegans Homolog of el...    27   2.3  
AF038611-4|AAB92042.3|  833|Caenorhabditis elegans Homolog of el...    27   2.3  
U13071-4|AAA20671.1|  510|Caenorhabditis elegans Hypothetical pr...    26   5.4  
U41016-9|ABC71809.1|  105|Caenorhabditis elegans Hypothetical pr...    26   7.2  
U40427-1|AAA81467.2|  798|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>AF016423-4|AAX88829.1|  185|Caenorhabditis elegans Hypothetical
           protein F40A3.3b protein.
          Length = 185

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 26/42 (61%), Positives = 29/42 (69%)
 Frame = +2

Query: 200 NELTPTQVKDIPSVSWEAASDQFYTLAMTDPDAPSRADPKFR 325
           N LTPTQVKD P V W+A     YTL  TDPDAPSR +P +R
Sbjct: 39  NVLTPTQVKDTPEVKWDAEPGALYTLIKTDPDAPSRKEPTYR 80


>AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical
           protein F40A3.3a protein.
          Length = 221

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 26/42 (61%), Positives = 29/42 (69%)
 Frame = +2

Query: 200 NELTPTQVKDIPSVSWEAASDQFYTLAMTDPDAPSRADPKFR 325
           N LTPTQVKD P V W+A     YTL  TDPDAPSR +P +R
Sbjct: 75  NVLTPTQVKDTPEVKWDAEPGALYTLIKTDPDAPSRKEPTYR 116


>AF038611-5|AAT27250.1|  760|Caenorhabditis elegans Homolog of elac2
           (cancer susceptibilitylocus) protein 1, isoform b
           protein.
          Length = 760

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 132 DIRHHLVCLEGFHDGRHGSRKHP 64
           +I+H L C+  F D  +GS K+P
Sbjct: 110 NIKHFLECIRPFQDSDYGSCKYP 132


>AF038611-4|AAB92042.3|  833|Caenorhabditis elegans Homolog of elac2
           (cancer susceptibilitylocus) protein 1, isoform a
           protein.
          Length = 833

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 132 DIRHHLVCLEGFHDGRHGSRKHP 64
           +I+H L C+  F D  +GS K+P
Sbjct: 183 NIKHFLECIRPFQDSDYGSCKYP 205


>U13071-4|AAA20671.1|  510|Caenorhabditis elegans Hypothetical
           protein T22F7.1 protein.
          Length = 510

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 241 ILGSCVGPVLYVGYD*SGRAITRRSQ 318
           I GSC  P+  V Y  SG +I  RSQ
Sbjct: 189 IQGSCYTPLTTVNYVLSGESIPHRSQ 214


>U41016-9|ABC71809.1|  105|Caenorhabditis elegans Hypothetical
           protein R11G1.7 protein.
          Length = 105

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 194 KCNELTPTQVKDIPSVSWEAASDQ 265
           KC +L   ++ D+ ++ WE +S+Q
Sbjct: 79  KCVKLATHEIDDLSALEWETSSEQ 102


>U40427-1|AAA81467.2|  798|Caenorhabditis elegans Hypothetical
           protein F43C9.3 protein.
          Length = 798

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 246 GKLRRTSSIRWL*LIRTRHHAPIP 317
           GK++RT S+    +   RHHAP+P
Sbjct: 172 GKVKRTESLS---IGMNRHHAPVP 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,773,224
Number of Sequences: 27780
Number of extensions: 151897
Number of successful extensions: 375
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)