Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_B16
(352 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 160 5e-41
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 93 2e-20
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 73 1e-14
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 48 3e-07
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 46 2e-06
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 44 7e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 43 2e-05
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 32 0.030
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.16
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 0.64
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 2.6
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 4.5
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 24 6.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 6.0
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 24 7.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 160 bits (389), Expect = 5e-41
Identities = 71/79 (89%), Positives = 75/79 (94%)
Frame = +2
Query: 116 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 295
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 296 RGIRRLKYPIEHGIVTNWD 352
RGI LKYPIEHGIV NWD
Sbjct: 62 RGILTLKYPIEHGIVNNWD 80
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 92.7 bits (220), Expect = 2e-20
Identities = 39/72 (54%), Positives = 53/72 (73%)
Frame = +2
Query: 134 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIRRL 313
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+ ++
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 314 KYPIEHGIVTNW 349
+ PIE GI+ NW
Sbjct: 72 QRPIERGIIQNW 83
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 73.3 bits (172), Expect = 1e-14
Identities = 36/79 (45%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Frame = +2
Query: 122 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 295
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 296 RGIRRLKYPIEHGIVTNWD 352
R + ++KYP+E+GI+ +++
Sbjct: 62 RSLLQVKYPMENGIIRDFE 80
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 48.4 bits (110), Expect = 3e-07
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +2
Query: 134 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIRRL 313
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G R +
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSI 82
Query: 314 -KYPIEHGIVTNWD 352
+ P E +++NWD
Sbjct: 83 ARSPFERNVISNWD 96
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 46.0 bits (104), Expect = 2e-06
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 24/97 (24%)
Frame = +2
Query: 134 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 262
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 263 ------DSYVGDEAQSKRGI-RRLKYPIEHGIVTNWD 352
D ++G++A K L YPI HG + NWD
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWD 103
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 44.0 bits (99), Expect = 7e-06
Identities = 27/78 (34%), Positives = 42/78 (53%)
Frame = +2
Query: 119 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 298
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 299 GIRRLKYPIEHGIVTNWD 352
G+ +K I +G V NWD
Sbjct: 62 GM-EIKNAIRNGWVENWD 78
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 42.7 bits (96), Expect = 2e-05
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +2
Query: 119 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 298
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 299 GI--RRLKYPIEHGIVTNWD 352
I +K +GI+ +W+
Sbjct: 62 PIPGMEVKNGKSNGIIQDWE 81
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.9 bits (69), Expect = 0.030
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 179 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIRRLKYP 322
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 29.5 bits (63), Expect = 0.16
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +2
Query: 146 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKRGIRR 310
N +GM + R F S VG + VG Q+DSY+ D++ S+R RR
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSERSYRR 377
Query: 311 LK 316
++
Sbjct: 378 VR 379
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 0.64
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 276 PT*ESF*PM-PTMTPW*RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSSS 115
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.4 bits (53), Expect = 2.6
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +3
Query: 126 LPRWS*TMGPECAKPVSRETTLPAPYFPRSW 218
L W T P+C P +RET + SW
Sbjct: 481 LETWMKTTCPKCHGPATRETDTMDTFVDSSW 511
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 4.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 134 LVVDNGSGMCKAGFAG 181
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 24.2 bits (50), Expect = 6.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 166 FAHSGPIVYDQRGNFLV 116
+ HS PI+YD+ G+ +V
Sbjct: 162 YTHSQPILYDRDGSLIV 178
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 6.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 222 RPTIEGNTARGASSPAKPALHIPDPLSTTNAATS 121
RP+ +G A G A P+ IP PL +N +S
Sbjct: 950 RPSNDGRKASGPRPAAPPS--IPPPLPVSNILSS 981
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 23.8 bits (49), Expect = 7.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 348 QLVTMPCSMGYLSLRIPLLLCASSPT*ESF 259
+L+ MP S + R P L+C + T E+F
Sbjct: 501 KLLVMPISSFHCVQRFPDLVCVQTSTAETF 530
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,340,100
Number of Sequences: 5004
Number of extensions: 24832
Number of successful extensions: 77
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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