Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_B16
(352 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 171 9e-44
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 171 9e-44
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 171 9e-44
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 171 9e-44
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 171 9e-44
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 171 9e-44
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 171 9e-44
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 171 9e-44
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 170 2e-43
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 170 2e-43
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 170 2e-43
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 169 6e-43
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 165 8e-42
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 133 4e-32
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 87 3e-18
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 79 9e-16
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 69 9e-13
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 56 9e-09
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 35 0.014
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 35 0.014
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 34 0.033
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 33 0.043
U42439-7|AAA83511.1| 304|Caenorhabditis elegans Collagen protei... 30 0.54
AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase... 29 1.2
AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase... 29 1.2
AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying de... 29 1.2
AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying de... 29 1.2
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 28 1.6
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 28 1.6
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 28 1.6
AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical ... 28 2.2
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 24 3.3
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 27 3.8
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 26 8.7
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 26 8.7
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 26 8.7
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 26 8.7
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 26 8.7
AF025469-6|AAR12979.1| 813|Caenorhabditis elegans Hypothetical ... 26 8.7
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ... 26 8.7
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 171 bits (417), Expect = 9e-44
Identities = 78/81 (96%), Positives = 79/81 (97%)
Frame = +2
Query: 110 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 289
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 290 SKRGIRRLKYPIEHGIVTNWD 352
SKRGI LKYPIEHGIVTNWD
Sbjct: 61 SKRGILTLKYPIEHGIVTNWD 81
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 171 bits (417), Expect = 9e-44
Identities = 78/81 (96%), Positives = 79/81 (97%)
Frame = +2
Query: 110 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 289
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 290 SKRGIRRLKYPIEHGIVTNWD 352
SKRGI LKYPIEHGIVTNWD
Sbjct: 61 SKRGILTLKYPIEHGIVTNWD 81
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 171 bits (417), Expect = 9e-44
Identities = 78/81 (96%), Positives = 79/81 (97%)
Frame = +2
Query: 110 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 289
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 290 SKRGIRRLKYPIEHGIVTNWD 352
SKRGI LKYPIEHGIVTNWD
Sbjct: 61 SKRGILTLKYPIEHGIVTNWD 81
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 171 bits (417), Expect = 9e-44
Identities = 78/81 (96%), Positives = 79/81 (97%)
Frame = +2
Query: 110 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 289
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 290 SKRGIRRLKYPIEHGIVTNWD 352
SKRGI LKYPIEHGIVTNWD
Sbjct: 61 SKRGILTLKYPIEHGIVTNWD 81
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 171 bits (417), Expect = 9e-44
Identities = 78/81 (96%), Positives = 79/81 (97%)
Frame = +2
Query: 110 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 289
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 290 SKRGIRRLKYPIEHGIVTNWD 352
SKRGI LKYPIEHGIVTNWD
Sbjct: 61 SKRGILTLKYPIEHGIVTNWD 81
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 171 bits (417), Expect = 9e-44
Identities = 78/81 (96%), Positives = 79/81 (97%)
Frame = +2
Query: 110 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 289
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 290 SKRGIRRLKYPIEHGIVTNWD 352
SKRGI LKYPIEHGIVTNWD
Sbjct: 61 SKRGILTLKYPIEHGIVTNWD 81
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 171 bits (417), Expect = 9e-44
Identities = 78/81 (96%), Positives = 79/81 (97%)
Frame = +2
Query: 110 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 289
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 290 SKRGIRRLKYPIEHGIVTNWD 352
SKRGI LKYPIEHGIVTNWD
Sbjct: 61 SKRGILTLKYPIEHGIVTNWD 81
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 171 bits (417), Expect = 9e-44
Identities = 78/81 (96%), Positives = 79/81 (97%)
Frame = +2
Query: 110 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 289
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 290 SKRGIRRLKYPIEHGIVTNWD 352
SKRGI LKYPIEHGIVTNWD
Sbjct: 61 SKRGILTLKYPIEHGIVTNWD 81
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 170 bits (414), Expect = 2e-43
Identities = 77/81 (95%), Positives = 79/81 (97%)
Frame = +2
Query: 110 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 289
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 290 SKRGIRRLKYPIEHGIVTNWD 352
SKRGI LKYPIEHGIVTNWD
Sbjct: 61 SKRGILTLKYPIEHGIVTNWD 81
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 170 bits (414), Expect = 2e-43
Identities = 77/81 (95%), Positives = 79/81 (97%)
Frame = +2
Query: 110 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 289
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 290 SKRGIRRLKYPIEHGIVTNWD 352
SKRGI LKYPIEHGIVTNWD
Sbjct: 61 SKRGILTLKYPIEHGIVTNWD 81
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 170 bits (414), Expect = 2e-43
Identities = 77/81 (95%), Positives = 79/81 (97%)
Frame = +2
Query: 110 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 289
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 290 SKRGIRRLKYPIEHGIVTNWD 352
SKRGI LKYPIEHGIVTNWD
Sbjct: 61 SKRGILTLKYPIEHGIVTNWD 81
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 169 bits (410), Expect = 6e-43
Identities = 75/81 (92%), Positives = 79/81 (97%)
Frame = +2
Query: 110 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 289
MCD++VAAL++DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 290 SKRGIRRLKYPIEHGIVTNWD 352
SKRGI LKYPIEHGIVTNWD
Sbjct: 61 SKRGILTLKYPIEHGIVTNWD 81
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 165 bits (401), Expect = 8e-42
Identities = 75/79 (94%), Positives = 77/79 (97%)
Frame = +2
Query: 116 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 295
+EE+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 296 RGIRRLKYPIEHGIVTNWD 352
RGI LKYPIEHGIVTNWD
Sbjct: 62 RGILTLKYPIEHGIVTNWD 80
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 133 bits (321), Expect = 4e-32
Identities = 60/63 (95%), Positives = 61/63 (96%)
Frame = +2
Query: 164 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIRRLKYPIEHGIVT 343
+AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI LKYPIEHGIVT
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 64
Query: 344 NWD 352
NWD
Sbjct: 65 NWD 67
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 87.4 bits (207), Expect = 3e-18
Identities = 36/72 (50%), Positives = 52/72 (72%)
Frame = +2
Query: 134 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIRRL 313
+V+DNGSG+ KAGFAG+ P+ F + VGRP++ VM G D ++G +A+S RG+ +
Sbjct: 11 VVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIGPKAESNRGLFSI 70
Query: 314 KYPIEHGIVTNW 349
+YP+EHGIV NW
Sbjct: 71 EYPMEHGIVNNW 82
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 79.0 bits (186), Expect = 9e-16
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = +2
Query: 242 MVGMGQKDSYVGDEAQSKRGIRRLKYPIEHGIVTNWD 352
MVGMGQKDSYVGDEAQSKRGI LKYPIEHGIVTNWD
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWD 37
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 68.9 bits (161), Expect = 9e-13
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Frame = +2
Query: 134 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGIR 307
+VVDNG+G K G+AG + P +FPS+VGRP R + + KD VG+E R +
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQML 68
Query: 308 RLKYPIEHGIVTNWD 352
+ YP+++GIV NWD
Sbjct: 69 DINYPMDNGIVRNWD 83
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 55.6 bits (128), Expect = 9e-09
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Frame = +2
Query: 110 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSI------VGRPRHQG------VMVGM 253
M ++ A V+DNG+G K G+AG+ P+ + PS V Q V G+
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGI 60
Query: 254 GQKDSYVGDEAQSKRGIR-RLKYPIEHGIVTNWD 352
D ++GDEA S +KYPI HGIV +WD
Sbjct: 61 DDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWD 94
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 35.1 bits (77), Expect = 0.014
Identities = 21/76 (27%), Positives = 37/76 (48%)
Frame = +2
Query: 125 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 304
+ ++ DNG K G ++PR V P+ + + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLV-PNSIVKAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 305 RRLKYPIEHGIVTNWD 352
++ PIE G V NWD
Sbjct: 58 FYVR-PIERGYVVNWD 72
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 35.1 bits (77), Expect = 0.014
Identities = 21/76 (27%), Positives = 37/76 (48%)
Frame = +2
Query: 125 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 304
+ ++ DNG K G ++PR V P+ + + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLV-PNSIVKAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 305 RRLKYPIEHGIVTNWD 352
++ PIE G V NWD
Sbjct: 58 FYVR-PIERGYVVNWD 72
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 33.9 bits (74), Expect = 0.033
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -2
Query: 255 PMPTMTPW*RGRPTIEGNTARGASSPAKPALHIPDPL 145
P T TP RGRP I + ++ P P PDPL
Sbjct: 336 PPATQTPRSRGRPRIHSSASKKTEKPETPRAESPDPL 372
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 33.5 bits (73), Expect = 0.043
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 119 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 217
+EV+ LV D GS + GFAG++ P+ PS +
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYI 41
>U42439-7|AAA83511.1| 304|Caenorhabditis elegans Collagen protein
110 protein.
Length = 304
Score = 29.9 bits (64), Expect = 0.54
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 217 GATSSPGRHGRHGSEG 264
G + +PGRHGRHG+ G
Sbjct: 109 GPSGTPGRHGRHGAPG 124
>AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase C
beta protein.
Length = 1418
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -2
Query: 228 RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSS 118
R P +E + +SSPA P++ P P +T++ +TSS
Sbjct: 641 RAHPEVEQPVS--SSSPATPSISGPPPCATSSGSTSS 675
>AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase C
beta homolog EGL-8 protein.
Length = 1431
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -2
Query: 228 RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSS 118
R P +E + +SSPA P++ P P +T++ +TSS
Sbjct: 642 RAHPEVEQPVS--SSSPATPSISGPPPCATSSGSTSS 676
>AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying
defective protein 8,isoform a protein.
Length = 1419
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -2
Query: 228 RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSS 118
R P +E + +SSPA P++ P P +T++ +TSS
Sbjct: 642 RAHPEVEQPVS--SSSPATPSISGPPPCATSSGSTSS 676
>AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying
defective protein 8,isoform b protein.
Length = 1431
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -2
Query: 228 RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSS 118
R P +E + +SSPA P++ P P +T++ +TSS
Sbjct: 642 RAHPEVEQPVS--SSSPATPSISGPPPCATSSGSTSS 676
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical protein
C12C8.3b protein.
Length = 1143
Score = 28.3 bits (60), Expect = 1.6
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -1
Query: 316 FESADTPLALCLITYVGVLLTHADHDALVTRSPHDRGKYGA-GSVVSRETGFAHSGPIVY 140
F++ D+P LC + +L+T ++ L SP + + GS + F +V
Sbjct: 980 FKNLDSPRGLCYLPDGQLLITDFNNHRLAVLSPRNMSEMKVYGSEGDGDGMFVRPQGVVI 1039
Query: 139 DQRGNFLV 116
D G+ LV
Sbjct: 1040 DPEGHILV 1047
>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical protein
C12C8.3a protein.
Length = 1147
Score = 28.3 bits (60), Expect = 1.6
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -1
Query: 316 FESADTPLALCLITYVGVLLTHADHDALVTRSPHDRGKYGA-GSVVSRETGFAHSGPIVY 140
F++ D+P LC + +L+T ++ L SP + + GS + F +V
Sbjct: 984 FKNLDSPRGLCYLPDGQLLITDFNNHRLAVLSPRNMSEMKVYGSEGDGDGMFVRPQGVVI 1043
Query: 139 DQRGNFLV 116
D G+ LV
Sbjct: 1044 DPEGHILV 1051
>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
Length = 1147
Score = 28.3 bits (60), Expect = 1.6
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -1
Query: 316 FESADTPLALCLITYVGVLLTHADHDALVTRSPHDRGKYGA-GSVVSRETGFAHSGPIVY 140
F++ D+P LC + +L+T ++ L SP + + GS + F +V
Sbjct: 984 FKNLDSPRGLCYLPDGQLLITDFNNHRLAVLSPRNMSEMKVYGSEGDGDGMFVRPQGVVI 1043
Query: 139 DQRGNFLV 116
D G+ LV
Sbjct: 1044 DPEGHILV 1051
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 28.3 bits (60), Expect = 1.6
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -1
Query: 316 FESADTPLALCLITYVGVLLTHADHDALVTRSPHDRGKYGA-GSVVSRETGFAHSGPIVY 140
F++ D+P LC + +L+T ++ L SP + + GS + F +V
Sbjct: 980 FKNLDSPRGLCYLPDGQLLITDFNNHRLAVLSPRNMSEMKVYGSEGDGDGMFVRPQGVVI 1039
Query: 139 DQRGNFLV 116
D G+ LV
Sbjct: 1040 DPEGHILV 1047
>AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical
protein C08F1.11 protein.
Length = 279
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 164 KAGFAGDDAPRAVFPSIVGRPRHQG 238
KA + G D P+A F I+G ++G
Sbjct: 44 KASYLGHDTPQATFREIIGNKEYRG 68
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 24.2 bits (50), Expect(2) = 3.3
Identities = 12/38 (31%), Positives = 14/38 (36%)
Frame = +1
Query: 229 SPGRHGRHGSEGLLRR**GTEQEGYPQTQIPHRTRHRH 342
+P HG HG G+ G GY H H H
Sbjct: 599 APAHHGHHGEHGVHH---GHHGAGYGAHHGHHGAHHHH 633
Score = 21.4 bits (43), Expect(2) = 3.3
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +1
Query: 217 GATSSPGRHGRHG 255
G+ SP HG HG
Sbjct: 553 GSHHSPAHHGHHG 565
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 217 GATSSPGRHGRHGS 258
G PGRHGRHGS
Sbjct: 358 GPPHCPGRHGRHGS 371
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 225 GRPTIEGNTARGASSPAKPALHIP 154
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 225 GRPTIEGNTARGASSPAKPALHIP 154
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -2
Query: 255 PMPTMTPW*RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSSS 115
P+PT T PT T G +P+ +P P +T + T ++
Sbjct: 492 PVPTTTNTPPANPTTATPTTVGTMTPSTGTTTVPVPTTTGSPTTQTT 538
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 225 GRPTIEGNTARGASSPAKPALHIP 154
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 225 GRPTIEGNTARGASSPAKPALHIP 154
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>AF025469-6|AAR12979.1| 813|Caenorhabditis elegans Hypothetical
protein W09B6.1b protein.
Length = 813
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 136 QRGNFLVAHCELVF 95
Q G F+V HCE+V+
Sbjct: 645 QNGEFMVTHCEIVY 658
>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
protein W09B6.1a protein.
Length = 2054
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 136 QRGNFLVAHCELVF 95
Q G F+V HCE+V+
Sbjct: 645 QNGEFMVTHCEIVY 658
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,702,071
Number of Sequences: 27780
Number of extensions: 151280
Number of successful extensions: 552
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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