Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B14
         (165 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0907 + 8949102-8949160,8949662-8949842,8951816-8951941,895...    28   0.89 
02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344...    26   3.6  
03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509           25   8.3  

>08_01_0907 +
           8949102-8949160,8949662-8949842,8951816-8951941,
           8952082-8952092,8952237-8952360,8952447-8952546,
           8952807-8952849,8953033-8953153
          Length = 254

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -3

Query: 136 LLQANNKTIRVTQDVQTQHQYIQLFECLP 50
           ++ A+N+ ++ T D+ T+HQY+   E +P
Sbjct: 54  VVDAHNQRLKRTMDLSTKHQYLPADEQMP 82


>02_05_0889 -
           32532495-32533832,32533919-32534151,32534321-32534461,
           32534564-32535521
          Length = 889

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 33  CKVTTPGRHSNSCMYWCWVWTSWVTRMVLLLA 128
           C +  P R +    YWCW + S    ++ LLA
Sbjct: 388 CNLDHPERPTKYGKYWCWCFWSVDVEVLELLA 419


>03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509
          Length = 332

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 111 YGLPRTSKPSTNTYSCLSACP 49
           YG P T +PST +    +ACP
Sbjct: 219 YGNPNTCRPSTYSQFFKNACP 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,603,549
Number of Sequences: 37544
Number of extensions: 71968
Number of successful extensions: 252
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 14,793,348
effective HSP length: 35
effective length of database: 13,479,308
effective search space used: 256106852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)