Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B14
         (165 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical pr...    45   6e-06
Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical pr...    45   6e-06
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z81593-3|CAB04741.1|  332|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AF099917-2|AAC68785.1|  235|Caenorhabditis elegans Hypothetical ...    25   7.2  
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    25   7.2  
Z83120-6|CAB76722.1|  809|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z66496-3|CAA91279.2|  570|Caenorhabditis elegans Hypothetical pr...    25   9.5  
AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical ...    25   9.5  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    25   9.5  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    25   9.5  

>Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical protein
            T08G11.1b protein.
          Length = 3185

 Score = 45.2 bits (102), Expect = 6e-06
 Identities = 21/50 (42%), Positives = 28/50 (56%)
 Frame = +2

Query: 14   KELIGQVQSHYTGQALKQXXXXXXXXXXXXNPYGLVVGLKKGVEDLFYEP 163
            ++L  ++ SHY  Q +KQ            NP+GLV  L  GVEDLFY+P
Sbjct: 2850 EQLNSEIISHYAKQFIKQVYVLVLGLDIIGNPFGLVRDLSAGVEDLFYQP 2899


>Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical protein
            T08G11.1a protein.
          Length = 3212

 Score = 45.2 bits (102), Expect = 6e-06
 Identities = 21/50 (42%), Positives = 28/50 (56%)
 Frame = +2

Query: 14   KELIGQVQSHYTGQALKQXXXXXXXXXXXXNPYGLVVGLKKGVEDLFYEP 163
            ++L  ++ SHY  Q +KQ            NP+GLV  L  GVEDLFY+P
Sbjct: 2877 EQLNSEIISHYAKQFIKQVYVLVLGLDIIGNPFGLVRDLSAGVEDLFYQP 2926


>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
            C25H3.8 protein.
          Length = 2148

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/44 (31%), Positives = 16/44 (36%)
 Frame = +2

Query: 29   QVQSHYTGQALKQXXXXXXXXXXXXNPYGLVVGLKKGVEDLFYE 160
            Q    Y  +  KQ            NP GLV  LK   + LF E
Sbjct: 1828 QFNKFYLAELQKQTLSIIVTLDAFGNPLGLVTDLKDSFQGLFIE 1871


>Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical
           protein C06C6.7 protein.
          Length = 935

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/47 (21%), Positives = 26/47 (55%)
 Frame = -3

Query: 163 RFVEEILDALLQANNKTIRVTQDVQTQHQYIQLFECLPGVVTLHLTY 23
           +F+E +  A + ++N+T+ V Q +    + + ++E +  +  +  TY
Sbjct: 141 KFIESVSSAAMDSSNETLTVEQAMLDVFKIMTIWERIGKLENISTTY 187


>Z81593-3|CAB04741.1|  332|Caenorhabditis elegans Hypothetical
           protein T20B3.3 protein.
          Length = 332

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 112 IRVTQDVQTQHQYIQLFECLPGVVTLHLTY*LFL 11
           I++    + +  +I LFEC+P  V L   + L L
Sbjct: 156 IKIPDQEEGKKNFINLFECVPPYVELKNVFYLIL 189


>AF099917-2|AAC68785.1|  235|Caenorhabditis elegans Hypothetical
           protein F54D10.5 protein.
          Length = 235

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -3

Query: 121 NKTIRVTQDVQTQHQYIQLFECL 53
           N+T+ VT+D +    ++ ++E L
Sbjct: 96  NRTLEVTEDAEVMENWVSIYELL 118


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -3

Query: 160 FVEEILDALLQANNKTIRVTQDVQTQHQYIQLF--ECLPGVVTLH 32
           +V+E+L+ L    +    V+Q+VQT  Q + ++    +  VV LH
Sbjct: 262 YVQEVLNLLPDVTHPDYIVSQNVQTNDQLMCVYMGSLVRSVVALH 306


>Z83120-6|CAB76722.1|  809|Caenorhabditis elegans Hypothetical
           protein R06A4.9 protein.
          Length = 809

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 106 PVWSCCWLEEGRR 144
           PV+S CW  EG+R
Sbjct: 135 PVYSVCWSPEGKR 147


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 33   CKVTTPGRHSNSCMYW 80
            C+  T GRH  SC  W
Sbjct: 1961 CEQNTDGRHCESCAAW 1976


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 33   CKVTTPGRHSNSCMYW 80
            C+  T GRH  SC  W
Sbjct: 1961 CEQNTDGRHCESCAAW 1976


>Z66496-3|CAA91279.2|  570|Caenorhabditis elegans Hypothetical
           protein E04D5.1a protein.
          Length = 570

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 110 TGYPGRPNPAPIHTAV*VPA 51
           T +   P PAP H AV VPA
Sbjct: 176 TNFALSPGPAPNHVAVYVPA 195


>AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical
           protein F54A3.6 protein.
          Length = 470

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 147 SSTPFFKPTTRPYGLPRTSKPSTNTYSCLSA 55
           SS+    P   P+G+P  ++PST + +  S+
Sbjct: 342 SSSSTVPPAVSPFGVPLGAQPSTTSSTTYSS 372


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 33   CKVTTPGRHSNSCMYW 80
            C+  T GRH  SC  W
Sbjct: 1961 CEQNTDGRHCESCAAW 1976


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 33   CKVTTPGRHSNSCMYW 80
            C+  T GRH  SC  W
Sbjct: 1961 CEQNTDGRHCESCAAW 1976


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,825,375
Number of Sequences: 27780
Number of extensions: 58829
Number of successful extensions: 206
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 12,740,198
effective HSP length: 35
effective length of database: 11,767,898
effective search space used: 223590062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)