Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_B13
(447 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 51 9e-08
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 28 0.75
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 27 0.99
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.3
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 26 3.0
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha... 25 4.0
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 25 5.3
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 24 9.3
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 24 9.3
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 24 9.3
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 50.8 bits (116), Expect = 9e-08
Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Frame = +1
Query: 235 QIGGEKNGGTRTVLL--KSRKSFYPTQDKIRSRSHGKSFSKHVRRT--RPNLTPGTVCIL 402
++ G KNGG R VL ++ +YP + + K K VR T R +L PGTVCIL
Sbjct: 5 KVNGAKNGGERMVLPAGEAAAKYYPAYRE----NVPKKARKAVRPTKLRASLAPGTVCIL 60
Query: 403 LAGRHAGKRVVLV 441
LAGR GKRVV++
Sbjct: 61 LAGRFRGKRVVVL 73
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 27.9 bits (59), Expect = 0.75
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 376 LTPGTVCILLAGRHAGKRVVLV 441
L PG V ++ GR AGK+VV++
Sbjct: 5 LKPGKVALITRGRFAGKKVVIL 26
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 0.99
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 376 LTPGTVCILLAGRHAGKRVVLV 441
L PG V ++ GR AGK+VV++
Sbjct: 5 LKPGKVALVTRGRFAGKKVVIL 26
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 1.3
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 292 SFYPTQDKIRSRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 429
+FY RS SH S S ++P LT + +L + H +R
Sbjct: 422 AFYHNSTSSRSSSHSSSHSLSSLSSKPILTASSSSLLTSSSHTYER 467
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 3.0
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 113 SETVYSVSPKAGCTTRRLYISLSVRRTRKLK 205
SET S S K+G T+RR S R +KLK
Sbjct: 2 SETTKSGSKKSGQTSRRAIHSCLACRRKKLK 32
>SPAC13G7.11 |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 4.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 184 KKNPKAEKPNIPTVVVKQ 237
K +PK EKP+I VV++Q
Sbjct: 200 KGSPKIEKPDIENVVIQQ 217
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 5.3
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 241 GGEKNGGTRTVLLKSRKSFYPTQDKIRSRSH 333
GGEKNG L S S+ T + RSH
Sbjct: 308 GGEKNGEAPLEALLSLLSYINTHQRQSERSH 338
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 24.2 bits (50), Expect = 9.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -1
Query: 312 VLSGVE*FPAFQQDCTSASILFTAYL 235
VLSG++ Q++CT ++L T+YL
Sbjct: 429 VLSGLQ--QLMQEECTDIAVLRTSYL 452
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 24.2 bits (50), Expect = 9.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 296 NDFLLFSRTVRVPPFFSPPICLT 228
ND L ++TV P FF+P +C T
Sbjct: 300 NDVEL-AKTVGTPAFFAPELCWT 321
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 24.2 bits (50), Expect = 9.3
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -2
Query: 290 FLLFSRTVRVPPF-FSPPICLTTTVGILGFSAFGFFLPTNLYI 165
FL + TV F F P + +L F FG F+P LY+
Sbjct: 383 FLTYFPTVAYMSFQFVAPPTGYEIIPVLWFIFFGIFIPVYLYM 425
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,899,779
Number of Sequences: 5004
Number of extensions: 38391
Number of successful extensions: 126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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