Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_B13
(447 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 52 2e-07
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 45 2e-05
08_02_0910 - 22522465-22522473,22522565-22522651,22522707-225227... 30 0.97
02_02_0470 - 10700092-10700505 30 0.97
10_08_0951 - 21769342-21769752 29 2.3
07_03_0319 - 16745161-16745205,16745304-16745370,16745593-16745741 28 3.0
01_07_0229 + 42161770-42164562 28 3.0
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 27 5.2
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479... 27 5.2
06_01_0873 - 6693397-6694038,6694231-6694370,6694713-6694930,669... 27 6.9
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 52.0 bits (119), Expect = 2e-07
Identities = 38/117 (32%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Frame = +1
Query: 112 LGNGVLRFSKSRMYHKKAIYKFVGKKN---PKAEKPNIPTVVVKQIGGEKNGGTRTVLLK 282
L G+ + S+S YH++ ++ K PKAEKP K V +
Sbjct: 7 LSQGIKKASRSHTYHRRGLWAIKAKHGGAFPKAEKP----AAAAAAAAPKFYPADDVKPR 62
Query: 283 SRKSFYPTQDKIRSRSHGK----SFSKHVRRTRPNLTPGTVCILLAGRHAGKRVVLV 441
+ P K+RS S S + + R ++TPGTV ILLAGR GKRVV +
Sbjct: 63 QPSTRKPNPTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFL 119
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 45.2 bits (102), Expect = 2e-05
Identities = 32/69 (46%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Frame = +1
Query: 250 KNGGTRTVLLK----SRKSFYPTQD-KIRSRSHGKSFSKHVRRTRPNLTPGTVCILLAGR 414
KNGGT K + FYP D K R+ S K+ +R T +TPGTV ILLAGR
Sbjct: 31 KNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTRKANPTKLRST---ITPGTVLILLAGR 87
Query: 415 HAGKRVVLV 441
+ GKRVV +
Sbjct: 88 YMGKRVVFL 96
>08_02_0910 -
22522465-22522473,22522565-22522651,22522707-22522768,
22523170-22523697,22524954-22525047
Length = 259
Score = 29.9 bits (64), Expect = 0.97
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 142 SRMYHKKAIYKFVGKKN-PKAEKPNIPTVVVKQI 240
S YHK IYKFV KKN P E+ V+ +I
Sbjct: 213 SGFYHKTHIYKFVKKKNLPLIERELTENVIPNEI 246
>02_02_0470 - 10700092-10700505
Length = 137
Score = 29.9 bits (64), Expect = 0.97
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 376 LTPGTVCILLAGRHAGKRVVLVGV 447
L PG ILL GR+AG++ V+V V
Sbjct: 5 LKPGKAVILLQGRYAGRKAVIVRV 28
>10_08_0951 - 21769342-21769752
Length = 136
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 376 LTPGTVCILLAGRHAGKRVVLVGV 447
L PG ILL GR AG++ V+V V
Sbjct: 5 LKPGKAVILLQGRFAGRKAVIVRV 28
>07_03_0319 - 16745161-16745205,16745304-16745370,16745593-16745741
Length = 86
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 196 KAEKPNIPTVVVKQIGGEKNGGTRTVLLKSRKSFYPT 306
+A P P +IGG+ GG L+ R+S YPT
Sbjct: 22 RAPTPLPPCAATAEIGGKNRGGG---FLRQRRSLYPT 55
>01_07_0229 + 42161770-42164562
Length = 930
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 116 ETVYSVSPKAGCTTRRLYISLSVRRTRKLKS 208
+T + SPKA T R+ Y+S S+R T LKS
Sbjct: 890 DTSVASSPKAFFTKRQPYLSSSIRYTSFLKS 920
>05_07_0112 -
27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 27.5 bits (58), Expect = 5.2
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +1
Query: 193 PKAEKPNIPTVVVKQIGGEKNGGTRTVLLKSRKSFYPTQDKIRSRSHGKSFSKHVRRTRP 372
P+ K N V +NG +L+S + K++ R +G RR+R
Sbjct: 737 PQLRKRNAENVNNHDDNEGRNGEDVISILRSGSAAVNAAAKMKERGYGNR-----RRSRH 791
Query: 373 NLTPGTV 393
LTPGTV
Sbjct: 792 RLTPGTV 798
>02_04_0625 -
24547435-24547569,24547674-24547742,24547871-24547997,
24548086-24548209,24548714-24548832,24548953-24549044,
24549124-24549329,24549429-24549534,24549636-24549740,
24549836-24549942,24550030-24550253,24550341-24550468,
24550945-24551022,24551338-24552012,24552655-24552798,
24552985-24553064,24553958-24554029,24554124-24554343,
24554460-24554590,24555118-24555243,24555567-24555695,
24556156-24556318,24556408-24556545,24557198-24557317,
24557521-24557682,24557751-24557876,24558172-24558342,
24558435-24558590,24559061-24559408
Length = 1526
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 178 VGKKNPKAEKPNIPTVVVKQIGGEKNGGTRTVLLKSRK 291
V K +PK KP VK+ +K G T K++K
Sbjct: 882 VAKSSPKLSKPASERQEVKRTSAKKTSGASTTAKKNKK 919
>06_01_0873 -
6693397-6694038,6694231-6694370,6694713-6694930,
6695040-6695133,6695247-6695483,6696192-6696260,
6696513-6696636
Length = 507
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -2
Query: 278 SRTVRVPPFFSPPICLT--TTVGILGFSAFGFFLPTNLYIAFLWY 150
S+T+R + P+ T G LG++AFG P N+ F +Y
Sbjct: 304 SKTMRKANALAMPVITAFYTLCGCLGYAAFGNAAPGNMLTGFGFY 348
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,214,421
Number of Sequences: 37544
Number of extensions: 270347
Number of successful extensions: 728
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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