Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B13
         (447 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    46   1e-05
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    31   0.50 
Z99942-1|CAB17068.2|  454|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z81584-9|CAB04680.2|  334|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z81584-2|CAE53738.1|  298|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical pr...    28   2.7  
U58754-2|AAB00671.1|  391|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AC006748-3|AAF60513.2|  382|Caenorhabditis elegans Hypothetical ...    27   6.2  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 44/114 (38%), Positives = 55/114 (48%)
 Frame = +1

Query: 100 RNYDLGNGVLRFSKSRMYHKKAIYKFVGKKNPKAEKPNIPTVVVKQIGGEKNGGTRTVLL 279
           RN+DL  GVLRFS SR+  KK      G+K PK  K     +   Q       GT+  L 
Sbjct: 12  RNFDLSPGVLRFSASRLRLKK------GEKKPKFTKDTSAKLPKLQ-----RNGTKFAL- 59

Query: 280 KSRKSFYPTQDKIRSRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRVVLV 441
                            H K+ +  +R+T   LTPGTV I+LAGRH GKRVV +
Sbjct: 60  ----------------GHSKTVT--LRKT---LTPGTVLIVLAGRHKGKRVVFL 92


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 30.7 bits (66), Expect = 0.50
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +1

Query: 295 FYPTQDKIRSRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 429
           FYPT+   ++RSHG   +       PN     V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>Z99942-1|CAB17068.2|  454|Caenorhabditis elegans Hypothetical
           protein H13N06.2 protein.
          Length = 454

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 239 ICLTTTVGILGFSAFGFFLPTNLYIAFLWY 150
           +C  +TVG+ GF A G  +P   +IA  WY
Sbjct: 7   VCALSTVGVEGFGAPG-IVPPESFIAERWY 35


>Z81584-9|CAB04680.2|  334|Caenorhabditis elegans Hypothetical
           protein T04C12.2a protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 230 TTTVGILGFSAFGFFLPTNLYIAFLWYILLLEKRSTPFPRS*FLGLPT 87
           T  + ++ FS  GFF    +Y  ++   +++   +  F RS FLG  T
Sbjct: 216 TGVIVLMLFSQLGFFTICCIYYLYISTAIMISSNTRKFQRSFFLGTIT 263


>Z81584-2|CAE53738.1|  298|Caenorhabditis elegans Hypothetical
           protein T04C12.2b protein.
          Length = 298

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 230 TTTVGILGFSAFGFFLPTNLYIAFLWYILLLEKRSTPFPRS*FLGLPT 87
           T  + ++ FS  GFF    +Y  ++   +++   +  F RS FLG  T
Sbjct: 180 TGVIVLMLFSQLGFFTICCIYYLYISTAIMISSNTRKFQRSFFLGTIT 227


>Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical
           protein F40F12.5 protein.
          Length = 1144

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 124 VLRFSKSRMYHKKAIYKFVGKKNPKAEKPNIPTVVVKQIGG 246
           +L F  S+++H +   K +G+ + K  +  +P VV   +GG
Sbjct: 857 ILGFIFSKVFHAEPFIKLIGQNHAKDSQYLVPIVVDDWLGG 897


>U58754-2|AAB00671.1|  391|Caenorhabditis elegans Hypothetical
           protein C39H7.4 protein.
          Length = 391

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +2

Query: 176 LSVRRTRKLKSPIYQPSWLSK*AVKRMEALVQSC*KAGNHSTPLRTRSGVVLMAR 340
           L  RR  ++ SP+Y P+ LS  A + +         +G  +TPLR R+ V  + R
Sbjct: 61  LPSRRLSEIDSPMYLPNLLSSTADRPLRNYAPI---SGYSTTPLRIRTDVSALPR 112


>AC006748-3|AAF60513.2|  382|Caenorhabditis elegans Hypothetical
           protein Y39A3B.2 protein.
          Length = 382

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 212 LGFSAFGFFLPTNLYIAFLWYILLLEKRSTP 120
           +GF     ++PT L +A  W    +++R+ P
Sbjct: 201 IGFHLVQSYIPTGLIVAISWVSFWIDRRAVP 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,782,391
Number of Sequences: 27780
Number of extensions: 223119
Number of successful extensions: 638
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)