Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_B13
(447 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 24 0.66
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 24 0.66
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 24 0.66
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 24 0.87
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 22 2.7
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 22 3.5
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 22 3.5
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 22 3.5
DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein. 22 3.5
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 21 4.6
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 21 6.1
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 21 8.1
AY736135-1|AAU84701.1| 253|Apis mellifera take-out-like carrier... 21 8.1
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 21 8.1
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 24.2 bits (50), Expect = 0.66
Identities = 10/44 (22%), Positives = 19/44 (43%)
Frame = -2
Query: 251 FSPPICLTTTVGILGFSAFGFFLPTNLYIAFLWYILLLEKRSTP 120
+S C V +G+ ++P+ L + W L + +TP
Sbjct: 207 YSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATP 250
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 24.2 bits (50), Expect = 0.66
Identities = 10/44 (22%), Positives = 19/44 (43%)
Frame = -2
Query: 251 FSPPICLTTTVGILGFSAFGFFLPTNLYIAFLWYILLLEKRSTP 120
+S C V +G+ ++P+ L + W L + +TP
Sbjct: 207 YSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATP 250
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 24.2 bits (50), Expect = 0.66
Identities = 10/44 (22%), Positives = 19/44 (43%)
Frame = -2
Query: 251 FSPPICLTTTVGILGFSAFGFFLPTNLYIAFLWYILLLEKRSTP 120
+S C V +G+ ++P+ L + W L + +TP
Sbjct: 146 YSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATP 189
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 23.8 bits (49), Expect = 0.87
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 93 QTEEL*PRKRCTPFLQKQDVPQEGYI 170
+T L PRKRC L+ ++ + G I
Sbjct: 460 ETLILPPRKRCKMILESMEIERNGLI 485
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 22.2 bits (45), Expect = 2.7
Identities = 8/31 (25%), Positives = 15/31 (48%)
Frame = -2
Query: 212 LGFSAFGFFLPTNLYIAFLWYILLLEKRSTP 120
LG+ F ++PT L + W ++ + P
Sbjct: 244 LGYYLFHTYIPTCLIVIMSWVSFWIKPEAAP 274
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 21.8 bits (44), Expect = 3.5
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = -2
Query: 212 LGFSAFGFFLPTNLYIAFLWYILLLEKRSTPFPR 111
+GF +++P+ L + W L ++P PR
Sbjct: 231 MGFFMMDYYIPSILIVVISWVSFWLHMDASP-PR 263
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 21.8 bits (44), Expect = 3.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 206 FSAFGFFLPTNLYIAFLWYILLLEK 132
+S GF + L+I W ILL +K
Sbjct: 365 YSRIGFPILFMLFIILYWPILLFKK 389
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 21.8 bits (44), Expect = 3.5
Identities = 7/31 (22%), Positives = 15/31 (48%)
Frame = -2
Query: 212 LGFSAFGFFLPTNLYIAFLWYILLLEKRSTP 120
LG+ F ++P+ L + W ++ + P
Sbjct: 213 LGYHLFHTYIPSALIVVMSWIAFWIKPEAIP 243
>DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein.
Length = 120
Score = 21.8 bits (44), Expect = 3.5
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = -3
Query: 406 PTECTLCRE*G*VSSY 359
PTEC CR G +Y
Sbjct: 37 PTECVFCRNNGEEEAY 52
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.4 bits (43), Expect = 4.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 217 PTVVVKQIGGEKNGGTRTVLLK 282
P V +KQ G GG T L+K
Sbjct: 659 PAVHIKQEGQSPEGGKLTRLIK 680
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 21.0 bits (42), Expect = 6.1
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = +2
Query: 86 KLANRGIMTSETVYSVSPKAGCTTRRLYISLSVRRTRKLKSPI 214
K+ + ++ S+T S + GC + RL+ +K+K +
Sbjct: 256 KMTPQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAV 298
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 20.6 bits (41), Expect = 8.1
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -2
Query: 287 LLFSRTVRVPPFFSPPICLTTTVGILGFSAFGFFLPTN 174
++F+ T+R F + VGI S F+LP++
Sbjct: 226 IVFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSD 263
>AY736135-1|AAU84701.1| 253|Apis mellifera take-out-like carrier
protein JHBP-1 protein.
Length = 253
Score = 20.6 bits (41), Expect = 8.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 247 EKNGGTRTVLLKSRKSFYPTQDKIR 321
EKNG T + K F P + K+R
Sbjct: 167 EKNGETYLRIKKHAVKFNPAKVKLR 191
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 20.6 bits (41), Expect = 8.1
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 381 SRHSVHSVGGQTRWQAC 431
S+ SVH GQT Q C
Sbjct: 366 SQTSVHYSNGQTHSQLC 382
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,868
Number of Sequences: 438
Number of extensions: 2816
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
- SilkBase 1999-2023 -