Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_B12
(335 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 32 0.027
SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pom... 29 0.14
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster... 26 1.3
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 1.8
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 25 2.3
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 25 3.1
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 25 3.1
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S... 25 4.1
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 25 4.1
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 24 5.4
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 24 7.1
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe... 24 7.1
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos... 23 9.4
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 23 9.4
>SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 226
Score = 31.9 bits (69), Expect = 0.027
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 335 TWVNRSPFTKDMFWFCGNVTKYP-PPTKTSKNFSHHNYFFGGHW 207
TW + FT++++WFCG P T + N +Y+ G+W
Sbjct: 116 TW-SADTFTENLYWFCGGDGNKPNMTTAAAMNSDIDSYYVYGNW 158
>SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 132
Score = 29.5 bits (63), Expect = 0.14
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -2
Query: 238 AITITFLEGIGGGARYVHTPWPAFLSVCLILSATFFKLRNSKARETSD 95
A+ FL G+ G + +H FL++CL LS T+F + + AR +D
Sbjct: 30 ALVAVFL-GLYIGTKSIHCLILFFLAICLWLSLTWFLVELAHARVNND 76
>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 480
Score = 26.2 bits (55), Expect = 1.3
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = +2
Query: 161 RKKCWPWGMDIPCTPTNALQKSNCD---G*SSWRSLLVVDTLSHCHRT 295
R+K G DIP P A QK++ D +SWR+ HC T
Sbjct: 21 RRKIRCTGSDIPGQPCLACQKAHADCHFSTTSWRACRKKSAPLHCPST 68
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 1.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 222 KVIVMAEVLGGLCWWWI 272
K + ++GGLCWW I
Sbjct: 280 KSVFQGYLMGGLCWWII 296
>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 25.4 bits (53), Expect = 2.3
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 208 GGGARYVHTPWPAFL 164
GGG +V TPW AFL
Sbjct: 227 GGGEGFVLTPWIAFL 241
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 25.0 bits (52), Expect = 3.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 258 KDLQELQPSQLLFWRALV 205
KDL +QPS LLF+ L+
Sbjct: 652 KDLANIQPSDLLFYAVLL 669
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 3.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 259 VGGGYFVTLPQNQNISL 309
+GG Y T+P NQN+ L
Sbjct: 644 IGGRYNTTIPFNQNVEL 660
>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
S28|Schizosaccharomyces pombe|chr 2|||Manual
Length = 288
Score = 24.6 bits (51), Expect = 4.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 178 WPAFLSVCLILSATFFKLRNSKARETSDFVNI 83
+PA + ++ F K+R S ET DF+ +
Sbjct: 104 FPASMETINLIVEKFEKIRASATEETKDFIKL 135
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 24.6 bits (51), Expect = 4.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 190 VHTPWPAFLSVCLILSATFF 131
V+ + AF+ VCL+L+A F+
Sbjct: 481 VYASYYAFILVCLVLAAEFY 500
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 24.2 bits (50), Expect = 5.4
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +3
Query: 213 PSKKVIVMAEVLGGLCWWWILCHIATEPEHIF 308
PS++ V+ + GG ILC + +P + +
Sbjct: 240 PSRETSVVHRIFGGYLRQQILCSVCKKPSNTY 271
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 23.8 bits (49), Expect = 7.1
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -3
Query: 222 FWRALVGVHGMSIPHGQHFFLFV*YYRQRFLSFVTVKLEKPVILLTFYK 76
FW + V G + H + FFL Y + TV L +P+ F K
Sbjct: 1259 FWILVEDVDGDRLLHYEQFFLLKKYKDDEHIVNFTVPLLEPLPPCYFIK 1307
>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 273
Score = 23.8 bits (49), Expect = 7.1
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -2
Query: 184 TPWPAFLSVCLILSATFFKLRNSKARETSDFVNIL*KGVKVLFTL*YR 41
+PWP FLSV L + L + +S F I G+ L +R
Sbjct: 22 SPWPFFLSVVLFFNCLAATLYLHGYKHSSVFFGISFLGLLATMYLWFR 69
>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 467
Score = 23.4 bits (48), Expect = 9.4
Identities = 9/28 (32%), Positives = 10/28 (35%)
Frame = -1
Query: 269 PPPTKTSKNFSHHNYFFGGHWWGCTVCP 186
P P K + HH W C V P
Sbjct: 121 PHPKKLPVVYCHHGLLMNSEVWVCNVDP 148
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 23.4 bits (48), Expect = 9.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 18 EFLFSNSYLYYKVNKTFTPFYKMLTK 95
EF +L Y NKTF+ YK+L++
Sbjct: 296 EFSLEGGFLNY--NKTFSNLYKVLSE 319
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,482,977
Number of Sequences: 5004
Number of extensions: 29113
Number of successful extensions: 81
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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