Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_B12
(335 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946 30 0.53
04_03_0142 + 11773124-11774158 29 1.2
09_06_0175 + 21350528-21351136 28 2.2
07_03_0715 + 20889399-20890111,20890950-20891060,20891128-208913... 28 2.2
06_01_0388 - 2773559-2773621,2774141-2774250,2774360-2774423,277... 28 2.2
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331... 27 2.9
10_08_0749 - 20282982-20283632,20284081-20284141,20284828-202848... 27 3.8
10_06_0038 - 9958520-9958763,9959240-9959394 27 3.8
06_01_1018 - 7964752-7964847,7964976-7967048 27 3.8
05_07_0016 + 27066856-27067032,27067431-27067515,27067977-270680... 27 3.8
12_02_0007 + 12233650-12233913 27 5.0
12_01_0107 - 843820-846335,846400-846511 27 5.0
11_01_0107 - 801148-803633,803727-803860,803990-804006,804321-80... 27 5.0
04_04_1581 - 34581455-34581466,34581525-34581616,34582584-345826... 27 5.0
02_05_0704 - 31064996-31065214,31065306-31065466,31065583-310656... 26 6.6
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 26 6.6
01_01_0533 + 3917101-3917603,3918312-3919305 26 6.6
03_05_0519 - 25131614-25134778 26 8.7
01_06_0011 - 25559099-25559238,25559781-25559814,25560172-255603... 26 8.7
>03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946
Length = 447
Score = 29.9 bits (64), Expect = 0.53
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 165 RNAGHGVWTYRAPPPMPSKKVIVMAE 242
R AGH VW PPP P ++ + +A+
Sbjct: 123 RGAGHEVWPPHHPPPPPQQQQLQLAQ 148
>04_03_0142 + 11773124-11774158
Length = 344
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 201 PPPMPSKKVIVMAEVLGGLCWWWI--LCHIATEPEHIFGEWRSV 326
PPP P ++VMA G W + +C +E E + EW +V
Sbjct: 282 PPPRPLGSLLVMAVAAGSSFWLFFPPICREGSE-EMLLEEWAAV 324
>09_06_0175 + 21350528-21351136
Length = 202
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -2
Query: 271 IHHQQRPPRTSAITITFLEGIGGGARYVHTP 179
+HHQQ PPR + G GGGAR V +P
Sbjct: 63 LHHQQ-PPRRRRRAVEESRG-GGGARRVRSP 91
>07_03_0715 +
20889399-20890111,20890950-20891060,20891128-20891338,
20891414-20891474,20891719-20891956,20892046-20892196,
20892415-20892703,20893464-20894207,20894720-20894851,
20895728-20895965,20896159-20896246,20896422-20896697
Length = 1083
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 320 SPFTKDMFWFCGNVTKYPPPTKTSKN 243
SP D WFCGN T Y P + + N
Sbjct: 15 SPAAGDR-WFCGNATTYTPNSAYTSN 39
>06_01_0388 -
2773559-2773621,2774141-2774250,2774360-2774423,
2775102-2775282,2775355-2775455,2777340-2777426,
2778028-2778140,2778430-2778679
Length = 322
Score = 27.9 bits (59), Expect = 2.2
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = -3
Query: 243 LQPSQLLFWRALVGVHGMSIPHGQHFFLFV*YYRQRFLSFVTVKLEKPVILLTFYKKE 70
L PS L W V G+ PHG+ L + SFV +E ++L+ Y E
Sbjct: 189 LDPSLRLAWAETVS--GLLKPHGELITLIYLVTEESIYSFVYFSIEDVMVLIISYCAE 244
>11_01_0432 +
3313060-3313107,3313610-3313753,3314510-3314662,
3315283-3315792,3315888-3317423,3317505-3317573,
3317742-3317807,3318517-3318640,3319464-3319690
Length = 958
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -2
Query: 178 WPAFLSVCLILSATFFKLRNSKARETSDFVN 86
W AF S ILS T + S A E DF+N
Sbjct: 543 WDAFTSAERILSVTSAETTQSLASELRDFIN 573
>10_08_0749 -
20282982-20283632,20284081-20284141,20284828-20284872,
20285293-20285672,20286382-20287050
Length = 601
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = -2
Query: 328 STDLHSPKICSGSVAM*QS---IHHQQRPPRTSAITITFLEG 212
S LH P+ + S+ M Q +HHQ PP +A T +G
Sbjct: 101 SLSLHRPEAAATSLLMQQQQQHLHHQPSPPAGAASTWQLQQG 142
>10_06_0038 - 9958520-9958763,9959240-9959394
Length = 132
Score = 27.1 bits (57), Expect = 3.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +3
Query: 249 GGLCWWWILCHIATEPEHI 305
GG+CWWW + P+ +
Sbjct: 97 GGVCWWWSMSASVGGPQQL 115
>06_01_1018 - 7964752-7964847,7964976-7967048
Length = 722
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -2
Query: 271 IHHQQRPPRTSAITITFLEGIGGGARYVHTPW 176
+H Q PP A + + G+ G Y+H W
Sbjct: 460 LHGQSAPPLGWAQRVRAIRGVAAGLLYLHEGW 491
>05_07_0016 +
27066856-27067032,27067431-27067515,27067977-27068044,
27068128-27068178,27068256-27068329,27068794-27068852,
27068926-27069002,27069173-27069289
Length = 235
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 238 AITITFLEGIGGGARYVHTPWPA 170
A+ I LEG GA +V+TP P+
Sbjct: 208 AVRIMLLEGFNKGATFVNTPQPS 230
>12_02_0007 + 12233650-12233913
Length = 87
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +2
Query: 173 WPWGMDIPCTPTNALQKSNCDG*SSWRSLLVV 268
W W PC PT A Q G WR L +
Sbjct: 40 WAWSGRTPCRPTAAEQSRKAMG-QCWRVLTAI 70
>12_01_0107 - 843820-846335,846400-846511
Length = 875
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 305 DMFWFCGNVTKYPPPTKTSKNFSHHN 228
D ++ GN +YPPP S SH++
Sbjct: 626 DSYYDQGNPPRYPPPDPFSPTHSHYH 651
>11_01_0107 -
801148-803633,803727-803860,803990-804006,804321-804504,
804819-804883
Length = 961
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 305 DMFWFCGNVTKYPPPTKTSKNFSHHN 228
D ++ GN +YPPP S SH++
Sbjct: 712 DSYYDQGNPPRYPPPDPFSPTHSHYH 737
>04_04_1581 -
34581455-34581466,34581525-34581616,34582584-34582686,
34583761-34583837,34583913-34583959,34584494-34584594,
34584751-34584840,34585152-34585271,34586171-34586517,
34587013-34587285,34587835-34588165
Length = 530
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Frame = -1
Query: 296 WFCGNVTKYPPPTKTSKNFSHHNY----FFGGHWWGCTVCPYPMASISF 162
W+ G + PPP +N HH Y H T+ P PMA + +
Sbjct: 36 WYHGILGAVPPPNVGRQNIVHHQYPAASLIQQHHQSPTM-PLPMAQLPY 83
>02_05_0704 -
31064996-31065214,31065306-31065466,31065583-31065660,
31066560-31066651,31066775-31066833,31066924-31067010,
31067118-31067214,31067311-31067495,31067593-31067665,
31067725-31067805,31067948-31068048,31068133-31068246,
31068391-31068488,31069789-31069915
Length = 523
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 265 HQQRPPRTSAITITFLEGIGGGARYVHTPWP 173
++ PP+T T GI GGA ++ P+P
Sbjct: 236 YRNAPPKTQFHCRTDRSGIIGGAPWIRVPYP 266
>01_06_1355 +
36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/55 (21%), Positives = 21/55 (38%)
Frame = -1
Query: 329 VNRSPFTKDMFWFCGNVTKYPPPTKTSKNFSHHNYFFGGHWWGCTVCPYPMASIS 165
+N SP+ + W+ N T++ +H G WW V ++S
Sbjct: 642 INGSPYNLTIHWYVTNPCASETSEDTNEQIKYHKV---GEWWSRNVVDIESDAVS 693
>01_01_0533 + 3917101-3917603,3918312-3919305
Length = 498
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = -2
Query: 262 QQRPPRTSAITITFLEGIGGGARYVHTPWPAFLSVCLILS 143
QQRPP + I+ G AR + PW F C S
Sbjct: 126 QQRPPASCIISDMIHSWAGDIARELGVPWLTFNGSCTFSS 165
>03_05_0519 - 25131614-25134778
Length = 1054
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 195 RAPPPMPSKKVIVMAEVLGGL 257
+APPP PSK + A V G L
Sbjct: 261 KAPPPSPSKMELAAAGVAGDL 281
>01_06_0011 -
25559099-25559238,25559781-25559814,25560172-25560333,
25560335-25560454
Length = 151
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -1
Query: 215 GHWWGCTVCPYPMAS 171
G WW C +C Y M S
Sbjct: 3 GWWWWCALCRYMMLS 17
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,816,924
Number of Sequences: 37544
Number of extensions: 206856
Number of successful extensions: 681
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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