Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B12
         (335 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034365-6|CAA22263.1|  347|Caenorhabditis elegans Hypothetical ...    30   0.47 
Z81146-5|CAB03522.3|  699|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    26   5.8  
Z22177-5|CAA80150.1|  576|Caenorhabditis elegans Hypothetical pr...    26   7.7  
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    26   7.7  
U58757-1|AAD47117.2|  620|Caenorhabditis elegans Dicer related h...    26   7.7  
AL132862-23|CAB60559.1|  540|Caenorhabditis elegans Hypothetical...    26   7.7  
AF095787-1|AAC64972.1|  563|Caenorhabditis elegans EAT-4 protein.      26   7.7  
AC024202-10|AAF36032.1|  327|Caenorhabditis elegans Hypothetical...    26   7.7  

>AL034365-6|CAA22263.1|  347|Caenorhabditis elegans Hypothetical
           protein Y69E1A.6 protein.
          Length = 347

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 129 SFVTVKLEKPVILLTFYKKE*KFYLLYNI 43
           S VT+ + KP  LLTFY     F L++NI
Sbjct: 5   SEVTIDVTKPTFLLTFYSIHGTFALVFNI 33


>Z81146-5|CAB03522.3|  699|Caenorhabditis elegans Hypothetical
           protein K10D11.3 protein.
          Length = 699

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -1

Query: 308 KDMFWFCGNV-TKYPPPTKTSKNFSHHNYFFGGHWWGCTVCPYPMASISFCLFNII 144
           +D+F  C    T++P     S    ++ Y++   WW  +  P    S  FC + ++
Sbjct: 20  EDIFVLCPTQDTQFPTKNNNSSTDQYNPYYYPYPWWPNSYIP-RYKSNQFCKWTVV 74


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 290 CGNVTKYPPPTKTSKNFSHHN 228
           C +     PPT  S +F HHN
Sbjct: 360 CASAPPVAPPTAPSTSFQHHN 380


>Z22177-5|CAA80150.1|  576|Caenorhabditis elegans Hypothetical
           protein ZK512.6 protein.
          Length = 576

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 171 AGHGVWTYRAPPPMPSK 221
           A HGVW Y APP   SK
Sbjct: 194 AMHGVWRYWAPPMERSK 210


>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 162 protein.
          Length = 2643

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 329 VNRSPFTKDMFWFCGNVTKYPPPTKT 252
           ++ SP   D +  CGNV    P TKT
Sbjct: 312 LSESPSANDSYITCGNVEGSEPATKT 337


>U58757-1|AAD47117.2|  620|Caenorhabditis elegans Dicer related
           helicase protein 2 protein.
          Length = 620

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 327 QQISIHQRYVLVLWQCDKVSTTNKDLQ 247
           +QI+ +  Y +V  +CD V  TNKD++
Sbjct: 461 EQINRNIVYKIVCMKCDTVLCTNKDIR 487


>AL132862-23|CAB60559.1|  540|Caenorhabditis elegans Hypothetical
           protein Y73F8A.30 protein.
          Length = 540

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 12  NREFLFSNSYLYYKVNKTFTPF 77
           N +FL  N YLY  +N T  PF
Sbjct: 57  NDDFLGWNPYLYGMINTTILPF 78


>AF095787-1|AAC64972.1|  563|Caenorhabditis elegans EAT-4 protein.
          Length = 563

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 171 AGHGVWTYRAPPPMPSK 221
           A HGVW Y APP   SK
Sbjct: 181 AMHGVWRYWAPPMERSK 197


>AC024202-10|AAF36032.1|  327|Caenorhabditis elegans Hypothetical
           protein Y71H2B.3 protein.
          Length = 327

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 285 QCDKVSTTNKDLQELQPSQLLFW 217
           Q + VS   ++L+EL  +QLLFW
Sbjct: 171 QLEAVSIDEQNLRELYITQLLFW 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,369,171
Number of Sequences: 27780
Number of extensions: 172973
Number of successful extensions: 505
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)