Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B10
         (151 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...    29   0.11 
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    27   0.34 
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    24   2.4  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    24   2.4  
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    23   4.1  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    22   9.6  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    22   9.6  

>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 28.7 bits (61), Expect = 0.11
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +2

Query: 92  KDWYDVKAPSMF 127
           KDWYD+KAP+ F
Sbjct: 27  KDWYDIKAPAFF 38


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 27.1 bits (57), Expect = 0.34
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 92  KDWYDVKAPSMF 127
           K+WYD+KAP+ F
Sbjct: 27  KEWYDIKAPAFF 38


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 40  SKGLYFYRPP 11
           S+GLYFY PP
Sbjct: 137 SRGLYFYHPP 146


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 114 ALTSYQSLQGERINNLLLNTLLASFRKAF 28
           A+T+  + +  +I  LLL  L+  FRK+F
Sbjct: 178 AMTAVINTKFPQIGELLLTRLIVQFRKSF 206


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 150 GAHFVSLVNMDGALTSYQSLQGERINNLLLNTLLASFRK 34
           G  FVS  N +    + + + G+++ +L L    A FR+
Sbjct: 259 GFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFRE 297


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 111 LTSYQSLQGERINNLLLNTLLASFRKAFIFT 19
           L SYQ L  ++  NLL  +LL+     F+FT
Sbjct: 302 LQSYQQLIVDQPANLLKFSLLSKKVSHFLFT 332


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 150 GAHFVSLVNMDGALTSYQSLQGERINNLLL 61
           G  FVS  + D A+ +   L G   NNL+L
Sbjct: 244 GFAFVSYYDRDCAIKARDRLDGYGWNNLIL 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 500,467
Number of Sequences: 5004
Number of extensions: 5755
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 30
effective length of database: 2,212,358
effective search space used: 42034802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)