Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B10
         (151 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120...    30   0.22 
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524...    30   0.22 
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221...    29   0.39 
05_05_0080 - 22243175-22243226,22243342-22243389,22243485-222435...    27   1.6  
10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595...    25   8.4  

>12_02_0012 -
           12309332-12310228,12311087-12311669,12311945-12312051,
           12313190-12313237,12315139-12315216,12315300-12315500,
           12315612-12315797,12315870-12316007,12318311-12318416,
           12318529-12318587
          Length = 800

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = +2

Query: 92  KDWYDVKAPSMF 127
           KDWYD+KAPS+F
Sbjct: 27  KDWYDIKAPSVF 38


>03_02_0043 +
           5242496-5242554,5242673-5242778,5243586-5243723,
           5243794-5243979,5244075-5244275,5244362-5244460
          Length = 262

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = +2

Query: 92  KDWYDVKAPSMF 127
           KDWYD+KAPS+F
Sbjct: 27  KDWYDIKAPSVF 38


>02_02_0482 -
           10819562-10819813,10820773-10820952,10822073-10822150,
           10823056-10823256,10823365-10823550,10823646-10823783,
           10824396-10824501,10824634-10824692
          Length = 399

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +2

Query: 92  KDWYDVKAPSMFT 130
           KDWYD+KAP++F+
Sbjct: 27  KDWYDIKAPTVFS 39


>05_05_0080 -
           22243175-22243226,22243342-22243389,22243485-22243540,
           22243752-22243819,22244712-22244773,22245166-22245214,
           22245818-22245899,22245987-22246064,22246441-22246499,
           22246727-22246805,22246946-22247218
          Length = 301

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 99  GTMLKRRPCSPMRQSGH 149
           G  L+R PC+P RQS H
Sbjct: 13  GAPLRRGPCAPRRQSAH 29


>10_06_0102 +
           10758601-10758948,10759051-10759257,10759349-10759507,
           10759617-10759709,10759913-10760008,10760457-10760724,
           10760805-10761047,10761298-10761422,10761499-10761615,
           10761705-10761779,10761886-10761942,10762035-10762139,
           10762244-10762330,10762790-10763047,10763075-10763263,
           10763418-10763528,10763640-10763729,10763814-10763990,
           10764075-10764152,10764412-10764726,10764819-10765162,
           10765304-10765541,10765631-10765998,10766106-10766316,
           10766622-10766801,10766886-10769045,10769151-10769207
          Length = 2251

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 136 LIGEHGRRFNIVPVFTG*KDQQSSS*HPSCLLSKGLYFYRPPSA 5
           LI E   R ++  V+ G      +   P  L  KG+ F  PPSA
Sbjct: 113 LIVEIAERTHVSAVWPGWGHASENPELPDALKEKGIIFLGPPSA 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,502,929
Number of Sequences: 37544
Number of extensions: 42378
Number of successful extensions: 55
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 14,793,348
effective HSP length: 30
effective length of database: 13,667,028
effective search space used: 259673532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)