Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B10
         (151 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003146-6|ABS83849.1|  233|Caenorhabditis elegans Skn-1 depende...    30   0.26 
Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...    29   0.45 
AF025452-6|AAK71871.1|  323|Caenorhabditis elegans Serpentine re...    26   3.2  

>AF003146-6|ABS83849.1|  233|Caenorhabditis elegans Skn-1 dependent
           zygotic transcriptprotein 22 protein.
          Length = 233

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 86  PCKDWYDVKAPSMFTNE 136
           PCK+W++ K P++F N+
Sbjct: 113 PCKNWFEFKVPNIFIND 129


>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +2

Query: 92  KDWYDVKAPSMF 127
           K+WYD+KAP+MF
Sbjct: 26  KEWYDIKAPNMF 37


>AF025452-6|AAK71871.1|  323|Caenorhabditis elegans Serpentine
           receptor, class i protein30 protein.
          Length = 323

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 78  INNLLLNTLLASFRKAFIFTARPR 7
           +N+L++ T    FRK F+F  +PR
Sbjct: 287 VNSLVVITTYPEFRKTFMFWKKPR 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,982
Number of Sequences: 27780
Number of extensions: 33070
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 12,740,198
effective HSP length: 30
effective length of database: 11,906,798
effective search space used: 226229162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)