Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B09
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.1  
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    26   2.7  
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          26   2.7  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   3.6  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    25   3.6  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   3.6  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   4.8  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   6.3  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   6.3  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    24   8.4  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           24   8.4  

>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 19/70 (27%), Positives = 26/70 (37%)
 Frame = -3

Query: 406 QQIAARRCSTEHNTPPGTEVVYRLFRAPTSN*GESGPYRSRGARAKEPTAPISEIRMGFD 227
           + I   R     N PP  E  Y       SN     PY  +  R   P  P S +   ++
Sbjct: 447 EPILENRSLLHLNRPPPIETHYSY----ESNNSSFSPYYHKRHRQISPYYPTSSVYGVYE 502

Query: 226 VAPHRSGARL 197
             PH S +R+
Sbjct: 503 SPPHMSDSRI 512


>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 88  DYA*TPLRPKPA*PNPARICSLWSPESREALNKVTLLVALHSG 216
           +YA     P P   + A+   +W PE RE L+ ++   A++ G
Sbjct: 22  EYAAHNYHPLPVCFSKAKGAKVWDPEGREYLDFLSAYSAVNQG 64


>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = -1

Query: 411 SLNRSQQDAALPSTTPRQERKSSTDYSEPRHRTEVSPDRIGAVAHALKNRPRRSP 247
           S ++SQQ  ++P T+ + +   + + +  R   E+   R+G        + R +P
Sbjct: 102 STDKSQQSFSVPETSIQPQSSQTPNITSLREEKELPTGRVGQKLKLTSQKQRFNP 156


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 341 VDDFRSWRGVVLGRAASCCDLLRLS 415
           VD FR W  +      SC DLL+LS
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLS 96


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -1

Query: 345 STDYSE---PRHRTEVSPDRIGAVAHALKNRPRRSPRSEW 235
           STD+S     +  TE++PD +  +A  L  +  R  + +W
Sbjct: 112 STDFSTLSTKKDETEIAPDCLHYIAELLFQKKEREVKEKW 151


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 60  AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 185
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = +3

Query: 39  VHALGRAAGGAKLPSAGLCLNASKAEASLAES--GKDMLTVEPRESGGSKQSDFTSRAPL 212
           V +  R   G  + S  +  NA   ++ + +S    D  +  PR S  S  +    R P 
Sbjct: 182 VRSPSRLGNGPNVRSPKVGFNAKSDDSPVVKSPGSNDKPSASPRISVRSLGNSSVVRPPT 241

Query: 213 R*GATSKPIRISEIGAVGSLAR 278
           R   T    R++   A GS+++
Sbjct: 242 RTSTTRPLSRVNVTNASGSISK 263


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -1

Query: 84  RMVASHH--RPLGRVHEPNVRNCGSSRTSC 1
           R+V +H     LG +H+ N ++CG    +C
Sbjct: 224 RLVVAHEIGHILGLIHDCNKKSCGDHSEAC 253


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -1

Query: 405 NRSQQDAALPSTTPRQERKSSTDYSEPRHRTEVSPDRIGAVAHALKN-RPRRSPRSEWAS 229
           N S Q   L S  P+QE  SST  +  +  T  S D     A+ L + R  +S R+  A+
Sbjct: 583 NDSSQRKPL-SVDPKQENVSSTVETAKQAETTASSDSFRKYANTLNDLRHLKSSRNRKAT 641

Query: 228 TS 223
           ++
Sbjct: 642 SN 643


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 12  ERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEAS 122
           E  +SF  L + +  A G +K+P A + L  S+ E S
Sbjct: 153 ESAKSFAALSNVVRSALGKSKVPQAAVQLVQSREEVS 189


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 378 PSTTPRQERKS-STDYSEPRHRTEVSPDR 295
           P T+  Q++ S STD  +P H   V+P R
Sbjct: 23  PRTSKDQQKLSISTDVKKPSHSAPVTPVR 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,744,376
Number of Sequences: 5004
Number of extensions: 33149
Number of successful extensions: 96
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)