Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_B09
(420 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81522-5|CAD98731.1| 663|Caenorhabditis elegans Hypothetical pr... 31 0.25
Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical pr... 31 0.25
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 29 1.0
U80437-19|AAB37630.2| 580|Caenorhabditis elegans Conserved olig... 28 2.4
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 28 2.4
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 28 2.4
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 27 4.1
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 27 4.1
L37867-1|AAA63155.1| 319|Caenorhabditis elegans homeodomain pro... 27 5.5
AL031630-13|CAA20992.1| 814|Caenorhabditis elegans Hypothetical... 27 5.5
Z93387-2|CAB07650.1| 763|Caenorhabditis elegans Hypothetical pr... 27 7.2
U13875-10|AAA21159.1| 332|Caenorhabditis elegans F-box synaptic... 27 7.2
U10438-16|AAO61447.1| 977|Caenorhabditis elegans Glutamate rece... 26 9.5
U10438-15|AAA19090.3| 908|Caenorhabditis elegans Glutamate rece... 26 9.5
AF318606-1|AAK01094.2| 977|Caenorhabditis elegans non-NMDA iono... 26 9.5
>Z81522-5|CAD98731.1| 663|Caenorhabditis elegans Hypothetical
protein F32B4.4b protein.
Length = 663
Score = 31.5 bits (68), Expect = 0.25
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -1
Query: 396 QQDAALPSTTPRQ---ERKSSTDYSEPRHRTEVSPDRIGAVAHALKNRPRRSPRSE 238
QQDA S Q ER SST S R +VSPDR H + PRR+P+ +
Sbjct: 267 QQDAPRASYQTEQYARERSSSTTTSS--RRRQVSPDRSEQRRHRDEPPPRRAPQEQ 320
>Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical
protein F32B4.4a protein.
Length = 771
Score = 31.5 bits (68), Expect = 0.25
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -1
Query: 396 QQDAALPSTTPRQ---ERKSSTDYSEPRHRTEVSPDRIGAVAHALKNRPRRSPRSE 238
QQDA S Q ER SST S R +VSPDR H + PRR+P+ +
Sbjct: 375 QQDAPRASYQTEQYARERSSSTTTSS--RRRQVSPDRSEQRRHRDEPPPRRAPQEQ 428
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 29.5 bits (63), Expect = 1.0
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = -1
Query: 411 SLNRSQQDAALPSTTPRQERKSST--DYSEPRHRTEV-SPDRIGAVAHALKNR--PRRSP 247
S +RS+ +P +ER+ S D PR R+ S DR + R PRRSP
Sbjct: 68 SRSRSKDRRTTRRRSPSRERRRSRSRDRGAPRRRSRTRSRDRRRSPPRRRDRRTPPRRSP 127
Query: 246 RSEWASTSRLTGVER 202
SRL G ER
Sbjct: 128 GRRSPPRSRLPGPER 142
>U80437-19|AAB37630.2| 580|Caenorhabditis elegans Conserved
oligomeric golgi (cog)component protein 5 protein.
Length = 580
Score = 28.3 bits (60), Expect = 2.4
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -1
Query: 399 SQQDAALP--STTPRQERKSSTDYSEPRHRTEVSPDRIGAVAHALKNRPRRSPRSE 238
S+Q A P TPR+E+K +EP +++P+ VA K P+ P +E
Sbjct: 98 SKQSEASPRKGRTPRKEKKDVEPEAEPEPEADIAPEP-EKVAIVEKPEPKPEPITE 152
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 375 STTPRQERKSSTDYSEPRHRTEVSPDRIGAVAHALKNRPRRSP 247
S +PR ER++S YS PR S R + + + P RSP
Sbjct: 214 SRSPRAERRASPKYS-PRRSRSRSRSRSRSRSRSASRSPSRSP 255
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 375 STTPRQERKSSTDYSEPRHRTEVSPDRIGAVAHALKNRPRRSP 247
S +PR ER++S YS PR S R + + + P RSP
Sbjct: 214 SRSPRAERRASPKYS-PRRSRSRSRSRSRSRSRSASRSPSRSP 255
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 27.5 bits (58), Expect = 4.1
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +3
Query: 66 GAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQSDFTSRAPLR*GATS 230
G KLPSAG ++S E++ + K GG S F S + G TS
Sbjct: 297 GGKLPSAGFGASSSN-ESAFGQQSKGFGGATKNGFGGDSSSSFGSGSKAGFGGTS 350
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 27.5 bits (58), Expect = 4.1
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +3
Query: 66 GAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQSDFTSRAPLR*GATS 230
G KLPSAG ++S E++ + K GG S F S + G TS
Sbjct: 297 GGKLPSAGFGASSSN-ESAFGQQSKGFGGATKNGFGGDSSSSFGSGSKAGFGGTS 350
>L37867-1|AAA63155.1| 319|Caenorhabditis elegans homeodomain
protein protein.
Length = 319
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -3
Query: 139 LPDSARLASALEAFRHNPADGSFXXXXXXXXX*TKCPKLRFLS 11
LPD + ++S+L HNP ++ TK PKL LS
Sbjct: 37 LPDDS-ISSSLAPLTHNPYAFNYSIPLPPTDITTKLPKLELLS 78
>AL031630-13|CAA20992.1| 814|Caenorhabditis elegans Hypothetical
protein Y38H6C.14 protein.
Length = 814
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = -1
Query: 396 QQDAALPSTTPRQERKSSTDYSEPRHRTEVSPDRIGAVAHALKNRPRRSPRSEWASTSR 220
Q AAL PRQ+ ++ + PRH++ + + + ++PR +S SR
Sbjct: 187 QSVAALSGQNPRQQVHATPSHQIPRHQSSRTHQNSRQQVPSATSSTLQNPRHRTSSASR 245
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/67 (25%), Positives = 28/67 (41%)
Frame = -1
Query: 414 LSLNRSQQDAALPSTTPRQERKSSTDYSEPRHRTEVSPDRIGAVAHALKNRPRRSPRSEW 235
++ +RS S+ Q+ S +DY PRH ++ P R V ++ P W
Sbjct: 71 ITQHRSSYKVTKSSSCHFQDEASPSDYQMPRH-LDLKP-RSSEVRVPVRAAPEPPREQSW 128
Query: 234 ASTSRLT 214
+ T T
Sbjct: 129 SQTEYAT 135
>Z93387-2|CAB07650.1| 763|Caenorhabditis elegans Hypothetical
protein T02E9.3 protein.
Length = 763
Score = 26.6 bits (56), Expect = 7.2
Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Frame = +3
Query: 27 FGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK-----QSD 191
FG L H G LP + S+ + ++++G + R+SGGSK Q D
Sbjct: 212 FGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPD 271
Query: 192 FTSRAPLR*GATSKPIRISEIGAVGSLARAPRLRYGPDSPQFDV 323
A + S I + LA R+ PD P DV
Sbjct: 272 IHIVAKPQQRWRSPTICAETLAHDRLLAAKKRVSIVPDPPSMDV 315
>U13875-10|AAA21159.1| 332|Caenorhabditis elegans F-box synaptic
protein protein 1 protein.
Length = 332
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -1
Query: 369 TPRQERKSSTDYSEPRHRTEVSPDRIGA--VAHALKNRPRRSPRSEWASTSRL 217
+P++ + S + + + + +PD H++ R RRSPR S SRL
Sbjct: 33 SPKERKTSMVECDDEGNPSSGTPDESPKQLTPHSIPPRRRRSPRRPEVSASRL 85
>U10438-16|AAO61447.1| 977|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 2, isoform b protein.
Length = 977
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 420 VGLSLNRSQQDAALPSTTPRQERKSSTDYSEPRHRTEVS 304
+G LN + D A+ T QER+ + D+S+P T +S
Sbjct: 561 IGYLLNETA-DVAVAPLTITQERERAVDFSKPFMTTGIS 598
>U10438-15|AAA19090.3| 908|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 2, isoform a protein.
Length = 908
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 420 VGLSLNRSQQDAALPSTTPRQERKSSTDYSEPRHRTEVS 304
+G LN + D A+ T QER+ + D+S+P T +S
Sbjct: 492 IGYLLNETA-DVAVAPLTITQERERAVDFSKPFMTTGIS 529
>AF318606-1|AAK01094.2| 977|Caenorhabditis elegans non-NMDA
ionotropic glutamate receptorsubunit GLR-2 protein.
Length = 977
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 420 VGLSLNRSQQDAALPSTTPRQERKSSTDYSEPRHRTEVS 304
+G LN + D A+ T QER+ + D+S+P T +S
Sbjct: 561 IGYLLNETA-DVAVAPLTITQERERAVDFSKPFMTTGIS 598
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,969,785
Number of Sequences: 27780
Number of extensions: 203472
Number of successful extensions: 667
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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