Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B08
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   0.51 
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    27   1.5  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   4.7  
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    25   4.7  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   4.7  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   4.7  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    24   8.2  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 28.3 bits (60), Expect = 0.51
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = -1

Query: 368 FGLSFCWCFFTFGLRYFFFSFWSRIGFLFLFRNGMLCFSGFCVSYRSRLSNQFLF 204
           F  SF + FF   +   +FS +  + FLF F   +  F  F  S    LS   LF
Sbjct: 129 FSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLFSLSHLLSLAILF 183


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 99  ITSNPTSQDLNFTMKVLLFCMAFAAVTIAKPVADEKQELVAQPTSVADTKTTETQ 263
           IT   TS+D N    + +FC+ F     A+P  +  + +V  P    +T  +++Q
Sbjct: 345 ITFETTSKDGNLLNAIRIFCLYFDLDYYARPNGEVLKLVVTHPNK-KNTSVSQSQ 398


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 18/65 (27%), Positives = 21/65 (32%)
 Frame = -2

Query: 388 AFVSSGCLVSASAGAFLPXXXXXXXXXXXXXXXXXXXXXXGCCVSVVFVSATEVG*ATSS 209
           AFVS     S+S+ A                          C V  V  SAT    A S+
Sbjct: 164 AFVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATATAKAASA 223

Query: 208 CFSSA 194
             SSA
Sbjct: 224 AASSA 228


>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 98  HNFKSDITGPKFHDEGLIILHGLCGCDYCE 187
           +N +  + G     E  + L  L GCDYCE
Sbjct: 208 YNIEKALNGLDMSVEQFVDLCILLGCDYCE 237


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 314 FSFWSRIGFLFLFRNGMLCFSGFCVSYRSR 225
           FS W  + FL+L     L F G  + +RSR
Sbjct: 433 FSSWLLLIFLYLLFTVPLSFVGSLIGFRSR 462


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 18/65 (27%), Positives = 21/65 (32%)
 Frame = -2

Query: 388 AFVSSGCLVSASAGAFLPXXXXXXXXXXXXXXXXXXXXXXGCCVSVVFVSATEVG*ATSS 209
           AFVS     S+S+ A                          C V  V  SAT    A S+
Sbjct: 164 AFVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATATAKAASA 223

Query: 208 CFSSA 194
             SSA
Sbjct: 224 AASSA 228


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 125 PKFHDEGLIILHGLCGCDYCEA 190
           P  + +GL ILH LC  DY ++
Sbjct: 199 PSEYSDGLPILHMLCFKDYTQS 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,288,632
Number of Sequences: 5004
Number of extensions: 20676
Number of successful extensions: 60
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)