Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B08
         (416 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical p...    31   0.25 
Z69794-4|CAA93678.3|  654|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z83112-2|CAB05539.1|  391|Caenorhabditis elegans Hypothetical pr...    27   4.1  
AF125964-4|ABA03109.1|  414|Caenorhabditis elegans Hypothetical ...    27   4.1  
AF047655-3|ABD63244.1|  414|Caenorhabditis elegans Hypothetical ...    27   4.1  
AF025465-11|AAB71024.1|  411|Caenorhabditis elegans Hypothetical...    27   4.1  
AF016422-3|AAG24173.1|  411|Caenorhabditis elegans Hypothetical ...    27   4.1  
AC024831-4|ABD63212.1|  355|Caenorhabditis elegans Hypothetical ...    27   4.1  
AF036703-4|AAB88555.1|  261|Caenorhabditis elegans Hypothetical ...    27   7.2  
AF101307-1|AAK84528.2|  294|Caenorhabditis elegans Serpentine re...    26   9.5  
AF022983-8|AAB69948.3|  294|Caenorhabditis elegans Serpentine re...    26   9.5  

>U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical
           protein C45G9.11 protein.
          Length = 354

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -1

Query: 371 VFGLSFCWCFFTFGLRYFF--FSFWSRIGFLFLFRNGMLCFSGFCVSYRSRLSNQFLFFI 198
           V  + + +C F+F + +FF  FS WS +    L    + C   FC  Y+  L N + FF+
Sbjct: 276 VLHIHYIFCIFSFFINFFFLIFSIWSLVSPGSLTFTPINCLLIFCFLYQLPL-NIWGFFV 334

Query: 197 SDRLRN 180
               R+
Sbjct: 335 VKSCRD 340


>Z69794-4|CAA93678.3|  654|Caenorhabditis elegans Hypothetical
           protein R03G8.3 protein.
          Length = 654

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 257 FSGFCVSYRSRLSNQFLFFISDR-LRNSHSRK 165
           F  F + +R +L N F+FF+ D  LR  + RK
Sbjct: 394 FHKFLIKHREQLDNSFVFFMGDHGLRFGNVRK 425


>Z83112-2|CAB05539.1|  391|Caenorhabditis elegans Hypothetical
           protein K02B7.2 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 159 MAFAAVTIAK--PVADEKQELVAQPTSVADTKTTE 257
           M+F    +AK  P+ +EK +LV +PT     +TTE
Sbjct: 37  MSFLEKLVAKYEPIKEEKPKLVPKPTRKRQPETTE 71


>AF125964-4|ABA03109.1|  414|Caenorhabditis elegans Hypothetical
           protein W03G1.3 protein.
          Length = 414

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 159 MAFAAVTIAK--PVADEKQELVAQPTSVADTKTTE 257
           M+F    +AK  P+ +EK +LV +PT     +TTE
Sbjct: 1   MSFLEKLVAKYEPIKEEKPKLVPKPTRKRQPETTE 35


>AF047655-3|ABD63244.1|  414|Caenorhabditis elegans Hypothetical
           protein C17B7.13 protein.
          Length = 414

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 159 MAFAAVTIAK--PVADEKQELVAQPTSVADTKTTE 257
           M+F    +AK  P+ +EK +LV +PT     +TTE
Sbjct: 1   MSFLEKLVAKYEPIKEEKPKLVPKPTRKRQPETTE 35


>AF025465-11|AAB71024.1|  411|Caenorhabditis elegans Hypothetical
           protein K02E7.2 protein.
          Length = 411

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 159 MAFAAVTIAK--PVADEKQELVAQPTSVADTKTTE 257
           M+F    +AK  P+ +EK +LV +PT     +TTE
Sbjct: 1   MSFLEKLVAKYEPIKEEKPKLVPKPTRKRQPETTE 35


>AF016422-3|AAG24173.1|  411|Caenorhabditis elegans Hypothetical
           protein R09E12.5 protein.
          Length = 411

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 159 MAFAAVTIAK--PVADEKQELVAQPTSVADTKTTE 257
           M+F    +AK  P+ +EK +LV +PT     +TTE
Sbjct: 1   MSFLEKLVAKYEPIKEEKPKLVPKPTRKRQPETTE 35


>AC024831-4|ABD63212.1|  355|Caenorhabditis elegans Hypothetical
           protein Y55F3C.11 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 159 MAFAAVTIAK--PVADEKQELVAQPTSVADTKTTE 257
           M+F    +AK  P+ +EK +LV +PT     +TTE
Sbjct: 1   MSFLEKLVAKYEPIKEEKPKLVPKPTRKRQPETTE 35


>AF036703-4|AAB88555.1|  261|Caenorhabditis elegans Hypothetical
           protein T11F8.1 protein.
          Length = 261

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 314 FSFWSRIGFLFLFRNGMLCFSGFCVSYRSRLSNQFLFFISD 192
           F +  RIG   +F+N +L    F     S L+  F FF+S+
Sbjct: 78  FKWHYRIGTYGIFQNNLLALLIFYNFQNSPLTTYFAFFVSN 118


>AF101307-1|AAK84528.2|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein31 protein.
          Length = 294

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 371 VFGLSFCWCFFTFGLRYFFFSFWSRIGFLFLFRNGMLC 258
           VF ++FC C++     +FF+   +   + F F N   C
Sbjct: 129 VFSIAFCTCWYEISKCFFFYDTQT---WTFEFENSEFC 163


>AF022983-8|AAB69948.3|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein32 protein.
          Length = 294

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 371 VFGLSFCWCFFTFGLRYFFFSFWSRIGFLFLFRNGMLC 258
           VF ++FC C++     +FF+   +   + F F N   C
Sbjct: 129 VFSIAFCTCWYEISKCFFFYDTQT---WTFEFENSEFC 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,248,413
Number of Sequences: 27780
Number of extensions: 125033
Number of successful extensions: 279
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)