Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B06
         (289 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...   102   9e-24
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...   102   9e-24
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    25   1.7  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    24   3.8  
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...    23   8.8  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    23   8.8  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    23   8.8  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    23   8.8  

>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score =  102 bits (245), Expect = 9e-24
 Identities = 49/64 (76%), Positives = 55/64 (85%)
 Frame = +3

Query: 81  SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEK 260
           ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRNEK
Sbjct: 5   AQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEK 64

Query: 261 IAVH 272
           IA H
Sbjct: 65  IACH 68


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score =  102 bits (245), Expect = 9e-24
 Identities = 49/64 (76%), Positives = 55/64 (85%)
 Frame = +3

Query: 81  SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEK 260
           ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRNEK
Sbjct: 5   AQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEK 64

Query: 261 IAVH 272
           IA H
Sbjct: 65  IACH 68


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +3

Query: 105 HIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 248
           H++ +  N  +G        A K+ +QLTG+           R  GIR
Sbjct: 604 HLQNISNNYMIGAINAENGEANKLKDQLTGEYKTVPNVAIDYRDHGIR 651


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 848

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 71 RSLLLLFIFFQCRRWYS 21
          RS+L + +FF C+ W++
Sbjct: 3  RSVLTIILFFSCQFWHA 19


>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 229 TVYLAFENTGCWPVSCSSTLAARVSLSPDSPTQMFRQSFLI 107
           TV +   +TG  P+S     A R  +S + P Q+ R + +I
Sbjct: 64  TVGIKESDTGLAPISFWDVAADRQRMSEEQPLQVARCTKII 104


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 267  QQSFHYDEYQKTLQCIWPLR 208
            ++S  Y EYQ+ L+C +  R
Sbjct: 1278 ERSMMYKEYQRVLECEYEYR 1297


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 277 CQWTAIFSLRRIPKDLTVYLAFENTGCW 194
           CQ     ++RR+   L  Y+A+E    W
Sbjct: 326 CQGDTFVAIRRLRGHLREYVAWERNTIW 353


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 255 HYDEYQKTLQCIWPLRIQVVG 193
           H  EY   L  IW L I V+G
Sbjct: 66  HPAEYSSILNRIWQLNIPVMG 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,095,098
Number of Sequences: 5004
Number of extensions: 19173
Number of successful extensions: 47
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)