Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_B06
(289 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 102 4e-23
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 102 4e-23
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 102 4e-23
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 102 5e-23
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390... 28 1.1
01_01_0582 - 4317216-4317731 26 5.6
03_05_0613 + 26124714-26124857,26125692-26126330,26126455-261266... 25 7.4
01_07_0141 - 41390483-41391448 25 7.4
01_05_0037 - 17452503-17452523,17452594-17452689,17453315-174534... 25 7.4
01_03_0134 + 12879254-12879596,12879689-12879796,12879905-128800... 25 7.4
07_03_1315 - 25722757-25722876,25722972-25723328,25723924-257245... 25 9.8
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 25 9.8
06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458 25 9.8
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 102 bits (245), Expect = 4e-23
Identities = 49/62 (79%), Positives = 55/62 (88%)
Frame = +3
Query: 87 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 266
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 267 VH 272
+
Sbjct: 69 CY 70
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 102 bits (245), Expect = 4e-23
Identities = 49/62 (79%), Positives = 55/62 (88%)
Frame = +3
Query: 87 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 266
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 267 VH 272
+
Sbjct: 69 CY 70
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 102 bits (245), Expect = 4e-23
Identities = 49/62 (79%), Positives = 55/62 (88%)
Frame = +3
Query: 87 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 266
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 267 VH 272
+
Sbjct: 69 CY 70
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 102 bits (244), Expect = 5e-23
Identities = 49/62 (79%), Positives = 55/62 (88%)
Frame = +3
Query: 87 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 266
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 35 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 94
Query: 267 VH 272
+
Sbjct: 95 CY 96
>08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,
3908317-3908337
Length = 1230
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Frame = -3
Query: 266 SNLFITTNTKRPYSVSGL*EYRLLAG---KLFQHLSGPS*PITRFSDTDVQAEFSD 108
SN+ TN K+P +VS + + LAG + ++ S + P+TR DV+ ++S+
Sbjct: 967 SNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSE 1022
>01_01_0582 - 4317216-4317731
Length = 171
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -1
Query: 250 RRIPKDLTVYLAFENTGCWPVSCSSTLAARVSLSPDSPTQMF 125
RRI ++ + TGC P S S+ AARV S Q F
Sbjct: 98 RRILRENKKRILLCATGCVPASSSAAAAARVPYDAYSYAQNF 139
>03_05_0613 +
26124714-26124857,26125692-26126330,26126455-26126695,
26126913-26127496
Length = 535
Score = 25.4 bits (53), Expect = 7.4
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +3
Query: 114 KLCL-NICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 266
K+C +C G S R L G+QP + R VRSF + K+A
Sbjct: 48 KVCKPRVCPGISSPRWPMNCPAL----GRQPAHYRGRVFVRSFDLESTSKLA 95
>01_07_0141 - 41390483-41391448
Length = 321
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 123 LNICVGESGDRLTRAAKVLEQL 188
+ +C G SGD L A+KV E L
Sbjct: 10 VGVCWGMSGDNLPPASKVTEML 31
>01_05_0037 -
17452503-17452523,17452594-17452689,17453315-17453419,
17453699-17453869,17454309-17454378,17454698-17454879,
17457297-17457406,17458353-17458457,17458537-17458615,
17458722-17458762,17459019-17459097,17460620-17460814
Length = 417
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 194 AGKLFQHLSGPS*PITRFSDTDVQAEFSDMKIPHNIF 84
AG + + L P P +S +D A F + +PHN+F
Sbjct: 233 AGGVIEGLFIPR-PKGDYSTSDAVAMFGSLVVPHNLF 268
>01_03_0134 +
12879254-12879596,12879689-12879796,12879905-12880000,
12880090-12880182,12880861-12880949,12881313-12881588,
12881656-12881808
Length = 385
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 113 SDMKIPHNIFRIVFRSLLLLFIF 45
S ++ PH +++F +LLLLF F
Sbjct: 18 SPLQSPHKQQQLIFAALLLLFFF 40
>07_03_1315 -
25722757-25722876,25722972-25723328,25723924-25724500,
25724577-25725265,25725487-25725822,25726190-25726527,
25726619-25726746,25726906-25727030,25727547-25727589,
25727714-25727802,25728396-25728511,25729157-25729276,
25729752-25729794
Length = 1026
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 289 HLEQCQWTAIFSLRRIPKDLTVYLAFENTGCW-PVSCSSTLAARVSLS 149
H+E C+W+ +F +P ++ LA + C+ PV S + V+ S
Sbjct: 459 HVENCKWSCMFGDVEVPAEV---LAHGSLRCYTPVHLSGRVPFYVTCS 503
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 25.0 bits (52), Expect = 9.8
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -1
Query: 217 AFENTGCWPVS 185
+FENTGCW S
Sbjct: 884 SFENTGCWDTS 894
>06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458
Length = 1217
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 129 ICVGESGDRLTRAAKVLEQLTGQ 197
+CV + D +T A +LE +TG+
Sbjct: 242 VCVSDIYDEITLARDILESVTGE 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,103,856
Number of Sequences: 37544
Number of extensions: 125352
Number of successful extensions: 376
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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