Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B06
         (289 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   121   1e-28
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   120   1e-28
U21317-12|AAN60539.1|  697|Caenorhabditis elegans Hypothetical p...    27   2.9  
U21317-11|AAN60538.3|  509|Caenorhabditis elegans Hypothetical p...    27   2.9  
U21317-10|AAA62529.1|  753|Caenorhabditis elegans Hypothetical p...    27   2.9  
AF125971-5|AAD14765.1|  484|Caenorhabditis elegans Hypothetical ...    27   2.9  
Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical pr...    26   5.0  
Z81113-4|CAB03281.2|  388|Caenorhabditis elegans Hypothetical pr...    26   5.0  
Z50859-2|CAA90727.2|  524|Caenorhabditis elegans Hypothetical pr...    25   6.6  
L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting...    25   6.6  
U41104-3|AAK18975.1|  378|Caenorhabditis elegans Hypothetical pr...    25   8.7  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  121 bits (291), Expect = 1e-28
 Identities = 57/64 (89%), Positives = 61/64 (95%)
 Frame = +3

Query: 81  SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEK 260
           ++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEK
Sbjct: 15  ARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEK 74

Query: 261 IAVH 272
           IAVH
Sbjct: 75  IAVH 78


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  120 bits (290), Expect = 1e-28
 Identities = 57/63 (90%), Positives = 60/63 (95%)
 Frame = +3

Query: 84  KNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI 263
           +NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKI
Sbjct: 16  RNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKI 75

Query: 264 AVH 272
           AVH
Sbjct: 76  AVH 78


>U21317-12|AAN60539.1|  697|Caenorhabditis elegans Hypothetical
           protein B0495.10c protein.
          Length = 697

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -1

Query: 256 SLRRIPKDLTVYLAFENTGCWPVS--CSSTLAARVSLSPDSPTQ 131
           +LR +P+ +  Y+   N    P    C S L    SL PD PT+
Sbjct: 603 ALRHVPQHMVQYMHNANIAAKPPIQVCRSPLFHSSSLIPDKPTE 646


>U21317-11|AAN60538.3|  509|Caenorhabditis elegans Hypothetical
           protein B0495.10b protein.
          Length = 509

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -1

Query: 256 SLRRIPKDLTVYLAFENTGCWPVS--CSSTLAARVSLSPDSPTQ 131
           +LR +P+ +  Y+   N    P    C S L    SL PD PT+
Sbjct: 365 ALRHVPQHMVQYMHNANIAAKPPIQVCRSPLFHSSSLIPDKPTE 408


>U21317-10|AAA62529.1|  753|Caenorhabditis elegans Hypothetical
           protein B0495.10a protein.
          Length = 753

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -1

Query: 256 SLRRIPKDLTVYLAFENTGCWPVS--CSSTLAARVSLSPDSPTQ 131
           +LR +P+ +  Y+   N    P    C S L    SL PD PT+
Sbjct: 603 ALRHVPQHMVQYMHNANIAAKPPIQVCRSPLFHSSSLIPDKPTE 646


>AF125971-5|AAD14765.1|  484|Caenorhabditis elegans Hypothetical
           protein Y4C6B.2a protein.
          Length = 484

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 110 DMKIPHNIFRIVFRSLLLLFIFF 42
           DMK PH+  R +  + +++FIF+
Sbjct: 226 DMKKPHHFSRSIIIAFIIIFIFY 248


>Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical
           protein R10E8.3 protein.
          Length = 522

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -1

Query: 286 LEQCQWTAIFSLRRIPKDLTVYLAFENTGCWPV 188
           LE   ++++ +LR +   L +YL  +   CW +
Sbjct: 239 LESLPFSSVLALRDVSTGLRIYLDGDRLHCWSI 271


>Z81113-4|CAB03281.2|  388|Caenorhabditis elegans Hypothetical
           protein T03F6.4 protein.
          Length = 388

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 152 ITRFSDTDVQAEFSDMKIPHNI-FRIVFRSLLLLFIFFQCRRWYSRPSCR 6
           ++ FSD+ +QA+F  +   H++    +    LL ++  Q  R+  R  C+
Sbjct: 112 VSHFSDSTMQAQFERVGTRHDVSVSPITTRTLLAYMNLQAIRFQVRKQCK 161


>Z50859-2|CAA90727.2|  524|Caenorhabditis elegans Hypothetical
           protein T26C5.2 protein.
          Length = 524

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 288 TSNSANGQQSFHYDEYQKTL 229
           T +S     SF YDE+QK L
Sbjct: 459 TEDSMTSPDSFEYDEFQKAL 478


>L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting
            protein protein8, isoform b protein.
          Length = 1780

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 193  PVSCSSTLAARVSLSPDSPTQMFRQ 119
            PVS ++    R++LS  SP Q F Q
Sbjct: 1213 PVSSATPQVKRIALSQSSPVQRFSQ 1237


>U41104-3|AAK18975.1|  378|Caenorhabditis elegans Hypothetical
           protein T12C9.1 protein.
          Length = 378

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 144 SGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 272
           S  R + +  +   LTGQ P+ SK R    S+    N +IA+H
Sbjct: 102 SSPRTSNSLMLELPLTGQMPILSKIR---ASYQTMCNARIALH 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,125,210
Number of Sequences: 27780
Number of extensions: 109834
Number of successful extensions: 254
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)