Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B06
         (289 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   0.99 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   0.99 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   0.99 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       19   9.2  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 0.99
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 184 SLPANNLYSQRPDTL 228
           +L A+ LYS+RPD L
Sbjct: 654 TLAASTLYSKRPDLL 668


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 0.99
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 184 SLPANNLYSQRPDTL 228
           +L A+ LYS+RPD L
Sbjct: 654 TLAASTLYSKRPDLL 668


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 0.99
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 184 SLPANNLYSQRPDTL 228
           +L A+ LYS+RPD L
Sbjct: 654 TLAASTLYSKRPDLL 668


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 223 TL*GLLVFVVMKR 261
           TL G LVFV MK+
Sbjct: 450 TLGGTLVFVEMKK 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,846
Number of Sequences: 438
Number of extensions: 1247
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5744526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)