Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_B05
         (393 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86...   143   4e-35
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880...   143   5e-35
04_04_0944 - 29557360-29557485,29557570-29557698,29557875-295579...    29   1.8  
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008...    27   4.1  
05_04_0020 - 17199627-17199947,17200129-17200203,17200301-172003...    27   4.1  
09_02_0574 - 10820107-10820154,10820313-10820432,10820608-108207...    27   7.1  

>06_01_0110 -
           866728-866952,867035-867193,867315-867448,868225-868333
          Length = 208

 Score =  143 bits (347), Expect = 4e-35
 Identities = 66/120 (55%), Positives = 84/120 (70%)
 Frame = +3

Query: 33  MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRC 212
           M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRP+V+C
Sbjct: 1   MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60

Query: 213 PTVRYHTKVRAGRGFTLREIRASGLNPSLARTIGIAVDPRRRNKSVESLQINVQRLKEYR 392
            T++Y+ K RAGRGFTL E++A+G+    A TIGI+VD RR+N+S+E LQ NVQRLK Y+
Sbjct: 61  QTLKYNMKSRAGRGFTLEELKAAGIPKKFAPTIGISVDHRRKNRSLEGLQANVQRLKTYK 120


>03_05_0108 -
           20887146-20887370,20887460-20887618,20887930-20888063,
           20888597-20888705
          Length = 208

 Score =  143 bits (346), Expect = 5e-35
 Identities = 66/120 (55%), Positives = 84/120 (70%)
 Frame = +3

Query: 33  MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRC 212
           M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRP+V+C
Sbjct: 1   MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60

Query: 213 PTVRYHTKVRAGRGFTLREIRASGLNPSLARTIGIAVDPRRRNKSVESLQINVQRLKEYR 392
            T++Y+ K RAGRGFTL E++A+G+    A TIGI+VD RR+N+S+E LQ NVQRLK Y+
Sbjct: 61  QTLKYNMKSRAGRGFTLEELKAAGIPKKYAPTIGISVDHRRKNRSLEGLQANVQRLKTYK 120


>04_04_0944 -
           29557360-29557485,29557570-29557698,29557875-29557917,
           29558321-29558400,29558493-29558804
          Length = 229

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 18  GKSFKMGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNR 146
           GKS +MG GN  IP+ H  ++  R    +  +    +  KQN+
Sbjct: 183 GKSIRMGSGNRRIPSAHESREKLRNSDIFKRRLDEPNDEKQNK 225


>05_05_0042 -
           21798255-21798871,21799400-21799777,21799861-21800820,
           21800918-21800957,21801471-21801766,21802696-21802774,
           21803013-21803100,21803189-21803273,21803364-21803625,
           21803720-21805027,21806187-21806393,21807288-21807519,
           21808267-21808353,21808427-21808735,21808879-21808957,
           21809788-21809867,21809952-21810029,21810744-21810831,
           21811102-21811241,21811342-21811415,21812043-21812125,
           21812403-21812516,21813975-21814136,21814377-21814641
          Length = 2036

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 12  RSGKSFKMGKGNNMIPNGHFHKDWQRFVKTWFN 110
           RS K+ +    NN++ + H H   + F+ TW N
Sbjct: 232 RSSKAEQKDALNNIVLSAHLHLQSEGFLSTWTN 264


>05_04_0020 -
           17199627-17199947,17200129-17200203,17200301-17200384,
           17200483-17200562,17201354-17201508,17202602-17203215
          Length = 442

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 358 NDSTDLLRLRGSTAIPIVLAKEGFNPEALISRRVNPLPARTFV**RT-VGQRTTGLR 191
           + ST      GSTA    LA+  F+ E  +SRR   LPAR FV  +  +G +  GLR
Sbjct: 73  SSSTPAAAAAGSTAAN-PLAR--FSVEPAVSRRQQQLPARQFVGGKVPLGLKRKGLR 126


>09_02_0574 -
           10820107-10820154,10820313-10820432,10820608-10820751,
           10821197-10821248,10821475-10821556,10821872-10822076,
           10822147-10822192,10823556-10823632
          Length = 257

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 107 KPCLHKSLPILMEMAIWYHIIPFTHFKRFTTSQ 9
           K C  KSL   + M +WY I  F  +++ ++ +
Sbjct: 121 KVCHDKSLAPFLIMLVWYDIATFLAYRKLSSGE 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,287,237
Number of Sequences: 37544
Number of extensions: 186070
Number of successful extensions: 403
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)